myRT

myRT report for GCA_009184015.1_ASM918401v1

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Seq: WEFQ01000001.1 Enterococcus faecium strain VRECG26, whole genome shotgun sequence (2792949 bp)
Overview 1 RT 1: 245886-254989 bp 2 RT 2: 1072414-1081889 bp 3 RT 3: 1214147-1219996 bp 4 RT 4: 2618431-2637679 bp 5 RT 5: 2698304-2702608 bp Neighborhood of RT #1 [245886, 255003] FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Neighborhood of RT #2 [1072414, 1081897] P-type_ATPase_Ca_prok P-type_ATPase_SERCA UbiE RVT-GII GIIM HMG-CoA-S_prok thiolase HMG-CoA_reductase_classII Neighborhood of RT #3 [1214147, 1220019] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #4 [2618431, 2637679] FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #5 [2698304, 2702608] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 245886-247031 bp Feature: domain Description: FtsK Location: 246495-247011 bp Feature: domain Description: FtsK Location: 246495-24701 1 bp Feature: gene Location: 247397-247627 bp Feature: gene Location: 247746-249605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248055-248796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248055-248796 bp Feature: domain Description: HNHc Note: nucleases Location: 249351-249489 bp Feature: domain Description: HNHc Note: nucleases Location: 249351 -249489 bp Feature: gene Location: 249699-249983 bp Feature: gene Location: 250162-251367 bp Feature: domain Description: HTH_XRE Location: 250207-250351 bp Feature: domain Description: HTH_XRE Location: 250207-250351 bp Feature: domain Description: Rol_Rep_N Location: 250378-250645 bp Feature: domain Description: Rol_Rep_N Location: 250378-250645 bp Feature: domain Description: Rep_trans Location: 250669-251278 bp Feature: domain Description: Rep_trans Location: 250669-251 278 bp Feature: gene Location: 252151-254061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252484-253222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252484-253222 bp Feature: domain Description: HNHc Note: nucleases Location: 253777-253942 bp Feature: domain Description: HNHc Note: nucleases Location: 253777-253942 bp Feature: gene Location: 254222-254389 bp Feature: gene Location: 254506-255003 bp Feature: domain Description: ArdA Location: 254524-254989 bp Feature: domain Description: ArdA Location: 254524-254989 bp Feature: gene Location: 1072414-1075080 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1072501-1074658 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1 072501 -1 074658 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1074781-1075054 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1 074781 -1 075054 bp Feature: gene Location: 1075444-1076196 bp Feature: domain Description: UbiE Location: 1075546-1075771 bp Feature: domain Description: UbiE Location: 1 075546-1 075771 bp Feature: gene Location: 1076649-1078037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076970-1077585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 076970-1 077585 bp Feature: domain Description: GIIM Note: maturase Location: 1077642-1077858 bp Feature: domain Description: GIIM Note: maturase Location: 1 077642-1 077858 bp Feature: gene Location: 1078117-1079271 bp Feature: domain Description: HMG-CoA-S_prok Location: 1078126-1079263 bp Feature: domain Description: HMG-CoA-S_prok Location: 1 0781 26-1 079263 bp Feature: gene Location: 1079447-1081897 bp Feature: domain Description: thiolase Location: 1079471-1080611 bp Feature: domain Description: thiolase Location: 1 079471 -1 08061 1 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1080650-1081889 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1 080650-1 081 889 bp Feature: gene Location: 1214147-1215271 bp Feature: domain Description: PRK06019 Location: 1214171-1215260 bp Feature: domain Description: PRK0601 9 Location: 1 21 41 71 -1 21 5260 bp Feature: gene Location: 1215284-1216579 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1215296-1216565 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 21 5296-1 21 6565 bp Feature: gene Location: 1216701-1218089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1217022-1217637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 7022-1 21 7637 bp Feature: domain Description: GIIM Note: maturase Location: 1217694-1217910 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 7694-1 21 791 0 bp Feature: gene Location: 1218658-1219035 bp Feature: gene Location: 1219291-1220019 bp Feature: domain Description: PRK09362 Location: 1219294-1219996 bp Feature: domain Description: PRK09362 Location: 1 21 9294-1 21 9996 bp Feature: gene Location: 2618431-2619597 bp Feature: domain Description: FtsK Location: 2619112-2619577 bp Feature: domain Description: FtsK Location: 261 91 1 2-261 9577 bp Feature: gene Location: 2619963-2620193 bp Feature: gene Location: 2620312-2622171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620621-2621362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620621 -2621 362 bp Feature: domain Description: HNHc Note: nucleases Location: 2621917-2622055 bp Feature: domain Description: HNHc Note: nucleases Location: 2621 91 7-2622055 bp Feature: gene Location: 2622265-2622504 bp Feature: gene Location: 2622582-2623256 bp Feature: domain Description: Zeta_toxin Location: 2622681-2623164 bp Feature: domain Description: Zeta_toxin Location: 2622681 -26231 64 bp Feature: gene Location: 2624934-2625077 bp Feature: gene Location: 2625170-2626354 bp Feature: domain Description: HTH_XRE Location: 2625200-2625344 bp Feature: domain Description: HTH_XRE Location: 2625200-2625344 bp Feature: domain Description: Rol_Rep_N Location: 2625377-2625641 bp Feature: domain Description: Rol_Rep_N Location: 2625377-2625641 bp Feature: domain Description: Rep_trans Location: 2625665-2626277 bp Feature: domain Description: Rep_trans Location: 2625665-2626277 bp Feature: gene Location: 2627234-2629144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2627567-2628305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2627567-2628305 bp Feature: domain Description: HNHc Note: nucleases Location: 2628860-2629025 bp Feature: domain Description: HNHc Note: nucleases Location: 2628860-2629025 bp Feature: gene Location: 2629332-2629472 bp Feature: gene Location: 2629485-2629988 bp Feature: domain Description: ArdA Location: 2629503-2629974 bp Feature: domain Description: ArdA Location: 2629503-2629974 bp Feature: gene Location: 2630048-2630437 bp Feature: domain Description: TcpE Location: 2630066-2630366 bp Feature: domain Description: TcpE Location: 2630066-2630366 bp Feature: gene Location: 2630424-2631974 bp Feature: domain Description: AAA_10 Location: 2631753-2631936 bp Feature: domain Description: AAA_1 0 Location: 2631 753-2631 936 bp Feature: gene Location: 2632671-2634497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2632971-2633670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2632971 -2633670 bp Feature: gene Location: 2634631-2635551 bp Feature: domain Description: AAA_10 Location: 2634637-2635516 bp Feature: domain Description: AAA_1 0 Location: 2634637-263551 6 bp Feature: gene Location: 2635556-2637679 bp Feature: gene Location: 2698304-2699578 bp Feature: domain Description: PRK09290 Location: 2698322-2699570 bp Feature: domain Description: PRK09290 Location: 2698322-2699570 bp Feature: gene Location: 2699679-2699993 bp Feature: domain Description: AlbA_2 Location: 2699718-2699889 bp Feature: domain Description: AlbA_2 Location: 269971 8-2699889 bp Feature: gene Location: 2700139-2701635 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2700547-2701003 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2700547-2701 003 bp Feature: gene Location: 2701813-2702292 bp Feature: domain Description: DUF3841 Location: 2701822-2702197 bp Feature: domain Description: DUF3841 Location: 2701 822-27021 97 bp Feature: gene Location: 2702459-2702608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), UbiE (COG2226)
GIIM (pfam08388), HMG-CoA-S_prok (TIGR01835), thiolase (PRK06158), HMG-CoA_reductase_classII (cd00644), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), Zeta_toxin (pfam06414), TcpE (pfam12648), AAA_10 (pfam12846)
PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: WEFQ01000002.1 Enterococcus faecium strain VRECG26, whole genome shotgun sequence (204975 bp)
Overview 1 RT 1: 25169-31022 bp Neighborhood of RT #1 [25169, 31141] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 25169-26863 bp Feature: domain Description: VirB4 Location: 25487-26171 bp Feature: domain Description: VirB4 Location: 2 5487-2 6171 bp Feature: gene Location: 27131-27364 bp Feature: gene Location: 27551-29428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27866-28604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7866-2 8604 bp Feature: domain Description: HNHc Note: nucleases Location: 29162-29315 bp Feature: domain Description: HNHc Note: nucleases Location: 2 9162 -2 9315 bp Feature: gene Location: 29616-29936 bp Feature: gene Location: 29936-31141 bp Feature: domain Description: Glucosaminidase Location: 30212-30608 bp Feature: domain Description: Glucosaminidase Location: 302 12 -30608 bp Feature: domain Description: Peptidase_M23 Location: 30785-31022 bp Feature: domain Description: Peptidase_M2 3 Location: 30785-3102 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: WEFQ01000003.1 Enterococcus faecium strain VRECG26, whole genome shotgun sequence (55700 bp)
Overview 1 RT 1: 43300-48574 bp Neighborhood of RT #1 [43300, 49266] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 43300-44499 bp Feature: domain Description: Glucosaminidase Location: 43570-43966 bp Feature: domain Description: Glucosaminidase Location: 43 570-43 966 bp Feature: domain Description: Peptidase_M23 Location: 44143-44380 bp Feature: domain Description: Peptidase_M23 Location: 44143 -443 80 bp Feature: gene Location: 44499-44819 bp Feature: gene Location: 45007-46884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45322-46060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 22-46060 bp Feature: domain Description: HNHc Note: nucleases Location: 46618-46771 bp Feature: domain Description: HNHc Note: nucleases Location: 46618-46771 bp Feature: gene Location: 47071-47304 bp Feature: gene Location: 47572-49266 bp Feature: domain Description: VirB4 Location: 47890-48574 bp Feature: domain Description: VirB4 Location: 47890-48574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: WEFQ01000004.1 Enterococcus faecium strain VRECG26, whole genome shotgun sequence (31567 bp)
Overview 1 RT 1: 13944-19090 bp Neighborhood of RT #1 [13944, 19119] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 13944-14105 bp Feature: gene Location: 14188-15141 bp Feature: domain Description: Tra8 Location: 14191-15118 bp Feature: domain Description: Tra8 Location: 14 191-15118 bp Feature: gene Location: 15119-16594 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 15467-15932 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 154 67-15932 bp Feature: gene Location: 16932-18410 bp Feature: domain Description: HsdM Location: 16953-18378 bp Feature: domain Description: HsdM Location: 16953-18378 bp Feature: gene Location: 18433-19119 bp Feature: domain Description: Rve Location: 18442-19090 bp Feature: domain Description: Rve Location: 184 4 2-19090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)