myRT

myRT report for GCA_009184035.1_ASM918403v1

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Seq: WEFO01000001.1 Enterococcus faecium strain VRECG28, whole genome shotgun sequence (2851567 bp)
Overview 1 RT 1: 257106-273999 bp 2 RT 2: 418469-425300 bp 3 RT 3: 2679905-2699153 bp 4 RT 4: 2756923-2761227 bp Neighborhood of RT #1 [257106, 273999] FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [418469, 425308] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2679905, 2699153] FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2756923, 2761227] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 257106-258251 bp Feature: domain Description: FtsK Location: 257715-258231 bp Feature: domain Description: FtsK Location: 25771 5-258231 bp Feature: gene Location: 258617-258847 bp Feature: gene Location: 258966-260825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259275-260016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259275-26001 6 bp Feature: domain Description: HNHc Note: nucleases Location: 260571-260709 bp Feature: domain Description: HNHc Note: nucleases Location: 260571 -260709 bp Feature: gene Location: 260919-261203 bp Feature: gene Location: 261382-262587 bp Feature: domain Description: HTH_XRE Location: 261427-261571 bp Feature: domain Description: HTH_XRE Location: 261 427-261 571 bp Feature: domain Description: Rol_Rep_N Location: 261598-261865 bp Feature: domain Description: Rol_Rep_N Location: 261 598-261 865 bp Feature: domain Description: Rep_trans Location: 261889-262498 bp Feature: domain Description: Rep_trans Location: 261 889-262498 bp Feature: gene Location: 263371-265281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263704-264442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263704-264442 bp Feature: domain Description: HNHc Note: nucleases Location: 264997-265162 bp Feature: domain Description: HNHc Note: nucleases Location: 264997-2651 62 bp Feature: gene Location: 265442-265609 bp Feature: gene Location: 265726-266223 bp Feature: domain Description: ArdA Location: 265744-266209 bp Feature: domain Description: ArdA Location: 265744-266209 bp Feature: gene Location: 266635-268239 bp Feature: domain Description: AAA_10 Location: 268018-268204 bp Feature: domain Description: AAA_1 0 Location: 26801 8-268204 bp Feature: gene Location: 268936-270762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269236-269935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269236-269935 bp Feature: gene Location: 270896-271813 bp Feature: domain Description: AAA_10 Location: 270902-271781 bp Feature: domain Description: AAA_1 0 Location: 270902-271 781 bp Feature: gene Location: 271816-273999 bp Feature: gene Location: 418469-419350 bp Feature: domain Description: CcmA Location: 418472-419342 bp Feature: domain Description: CcmA Location: 41 8472-41 9342 bp Feature: gene Location: 419604-420203 bp Feature: domain Description: AcrR Location: 419622-420108 bp Feature: domain Description: AcrR Location: 41 9622-4201 08 bp Feature: gene Location: 420690-422078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421011-421626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 01 1 -421 626 bp Feature: domain Description: GIIM Note: maturase Location: 421683-421899 bp Feature: domain Description: GIIM Note: maturase Location: 421 683-421 899 bp Feature: gene Location: 422171-423607 bp Feature: domain Description: CE4_DAC_u3_5s Location: 422975-423368 bp Feature: domain Description: CE4_DAC_u3_5s Location: 422975-423368 bp Feature: gene Location: 424052-425308 bp Feature: domain Description: PRK13354 Location: 424055-425300 bp Feature: domain Description: PRK1 3354 Location: 424055-425300 bp Feature: gene Location: 2679905-2681071 bp Feature: domain Description: FtsK Location: 2680586-2681051 bp Feature: domain Description: FtsK Location: 2680586-2681 051 bp Feature: gene Location: 2681437-2681667 bp Feature: gene Location: 2681786-2683645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2682095-2682836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2682095-2682836 bp Feature: domain Description: HNHc Note: nucleases Location: 2683391-2683529 bp Feature: domain Description: HNHc Note: nucleases Location: 2683391 -2683529 bp Feature: gene Location: 2683739-2683978 bp Feature: gene Location: 2684056-2684730 bp Feature: domain Description: Zeta_toxin Location: 2684155-2684638 bp Feature: domain Description: Zeta_toxin Location: 26841 55-2684638 bp Feature: gene Location: 2686408-2686551 bp Feature: gene Location: 2686644-2687828 bp Feature: domain Description: HTH_XRE Location: 2686674-2686818 bp Feature: domain Description: HTH_XRE Location: 2686674-268681 8 bp Feature: domain Description: Rol_Rep_N Location: 2686851-2687115 bp Feature: domain Description: Rol_Rep_N Location: 2686851 -26871 1 5 bp Feature: domain Description: Rep_trans Location: 2687139-2687751 bp Feature: domain Description: Rep_trans Location: 26871 39-2687751 bp Feature: gene Location: 2688708-2690618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2689041-2689779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2689041 -2689779 bp Feature: domain Description: HNHc Note: nucleases Location: 2690334-2690499 bp Feature: domain Description: HNHc Note: nucleases Location: 2690334-2690499 bp Feature: gene Location: 2690806-2690946 bp Feature: gene Location: 2690959-2691462 bp Feature: domain Description: ArdA Location: 2690977-2691448 bp Feature: domain Description: ArdA Location: 2690977-2691 448 bp Feature: gene Location: 2691522-2691911 bp Feature: domain Description: TcpE Location: 2691540-2691840 bp Feature: domain Description: TcpE Location: 2691 540-2691 840 bp Feature: gene Location: 2691898-2693448 bp Feature: domain Description: AAA_10 Location: 2693227-2693410 bp Feature: domain Description: AAA_1 0 Location: 2693227-269341 0 bp Feature: gene Location: 2694145-2695971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694445-2695144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694445-26951 44 bp Feature: gene Location: 2696105-2697025 bp Feature: domain Description: AAA_10 Location: 2696111-2696990 bp Feature: domain Description: AAA_1 0 Location: 26961 1 1 -2696990 bp Feature: gene Location: 2697030-2699153 bp Feature: gene Location: 2756923-2758197 bp Feature: domain Description: PRK09290 Location: 2756941-2758189 bp Feature: domain Description: PRK09290 Location: 2756941 -27581 89 bp Feature: gene Location: 2758298-2758612 bp Feature: domain Description: AlbA_2 Location: 2758337-2758508 bp Feature: domain Description: AlbA_2 Location: 2758337-2758508 bp Feature: gene Location: 2758758-2760254 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2759166-2759622 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 27591 66-2759622 bp Feature: gene Location: 2760432-2760911 bp Feature: domain Description: DUF3841 Location: 2760441-2760816 bp Feature: domain Description: DUF3841 Location: 2760441 -276081 6 bp Feature: gene Location: 2761078-2761227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), AAA_10 (pfam12846), CcmA (COG4133), AcrR (COG1309)
GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), Zeta_toxin (pfam06414), TcpE (pfam12648), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: WEFO01000003.1 Enterococcus faecium strain VRECG28, whole genome shotgun sequence (39350 bp)
Overview 1 RT 1: 26156-31250 bp Neighborhood of RT #1 [26156, 31279] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 26156-26317 bp Feature: gene Location: 26400-27353 bp Feature: domain Description: Tra8 Location: 26403-27330 bp Feature: domain Description: Tra8 Location: 2 6403-2 7330 bp Feature: gene Location: 27331-28806 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 27679-28144 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 7679-2 8144 bp Feature: gene Location: 29144-30559 bp Feature: domain Description: HsdM Location: 29165-30545 bp Feature: domain Description: HsdM Location: 2 9165-30545 bp Feature: gene Location: 30593-31279 bp Feature: domain Description: Rve Location: 30602-31250 bp Feature: domain Description: Rve Location: 30602 -312 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)