myRT

myRT report for GCA_009184075.1_ASM918407v1

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Seq: WEFS01000001.1 Enterococcus faecium strain VRECG24, whole genome shotgun sequence (2825432 bp)
Overview 1 RT 1: 258790-275683 bp 2 RT 2: 421641-428472 bp 3 RT 3: 2653770-2673018 bp 4 RT 4: 2730788-2735092 bp Neighborhood of RT #1 [258790, 275683] FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [421641, 428480] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2653770, 2673018] FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2730788, 2735092] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 258790-259935 bp Feature: domain Description: FtsK Location: 259399-259915 bp Feature: domain Description: FtsK Location: 259399-25991 5 bp Feature: gene Location: 260301-260531 bp Feature: gene Location: 260650-262509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260959-261700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260959-261 700 bp Feature: domain Description: HNHc Note: nucleases Location: 262255-262393 bp Feature: domain Description: HNHc Note: nucleases Location: 262255-262393 bp Feature: gene Location: 262603-262887 bp Feature: gene Location: 263066-264271 bp Feature: domain Description: HTH_XRE Location: 263111-263255 bp Feature: domain Description: HTH_XRE Location: 2631 1 1 -263255 bp Feature: domain Description: Rol_Rep_N Location: 263282-263549 bp Feature: domain Description: Rol_Rep_N Location: 263282-263549 bp Feature: domain Description: Rep_trans Location: 263573-264182 bp Feature: domain Description: Rep_trans Location: 263573-2641 82 bp Feature: gene Location: 265055-266965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265388-266126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265388-2661 26 bp Feature: domain Description: HNHc Note: nucleases Location: 266681-266846 bp Feature: domain Description: HNHc Note: nucleases Location: 266681 -266846 bp Feature: gene Location: 267126-267293 bp Feature: gene Location: 267410-267907 bp Feature: domain Description: ArdA Location: 267428-267893 bp Feature: domain Description: ArdA Location: 267428-267893 bp Feature: gene Location: 268319-269923 bp Feature: domain Description: AAA_10 Location: 269702-269888 bp Feature: domain Description: AAA_1 0 Location: 269702-269888 bp Feature: gene Location: 270620-272446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270920-271619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270920-271 61 9 bp Feature: gene Location: 272580-273497 bp Feature: domain Description: AAA_10 Location: 272586-273465 bp Feature: domain Description: AAA_1 0 Location: 272586-273465 bp Feature: gene Location: 273500-275683 bp Feature: gene Location: 421641-422522 bp Feature: domain Description: CcmA Location: 421644-422514 bp Feature: domain Description: CcmA Location: 421 644-42251 4 bp Feature: gene Location: 422776-423375 bp Feature: domain Description: AcrR Location: 422794-423280 bp Feature: domain Description: AcrR Location: 422794-423280 bp Feature: gene Location: 423862-425250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424183-424798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4241 83-424798 bp Feature: domain Description: GIIM Note: maturase Location: 424855-425071 bp Feature: domain Description: GIIM Note: maturase Location: 424855-425071 bp Feature: gene Location: 425343-426779 bp Feature: domain Description: CE4_DAC_u3_5s Location: 426147-426540 bp Feature: domain Description: CE4_DAC_u3_5s Location: 4261 47-426540 bp Feature: gene Location: 427224-428480 bp Feature: domain Description: PRK13354 Location: 427227-428472 bp Feature: domain Description: PRK1 3354 Location: 427227-428472 bp Feature: gene Location: 2653770-2654936 bp Feature: domain Description: FtsK Location: 2654451-2654916 bp Feature: domain Description: FtsK Location: 2654451 -265491 6 bp Feature: gene Location: 2655302-2655532 bp Feature: gene Location: 2655651-2657510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2655960-2656701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2655960-2656701 bp Feature: domain Description: HNHc Note: nucleases Location: 2657256-2657394 bp Feature: domain Description: HNHc Note: nucleases Location: 2657256-2657394 bp Feature: gene Location: 2657604-2657843 bp Feature: gene Location: 2657921-2658595 bp Feature: domain Description: Zeta_toxin Location: 2658020-2658503 bp Feature: domain Description: Zeta_toxin Location: 2658020-2658503 bp Feature: gene Location: 2660273-2660416 bp Feature: gene Location: 2660509-2661693 bp Feature: domain Description: HTH_XRE Location: 2660539-2660683 bp Feature: domain Description: HTH_XRE Location: 2660539-2660683 bp Feature: domain Description: Rol_Rep_N Location: 2660716-2660980 bp Feature: domain Description: Rol_Rep_N Location: 266071 6-2660980 bp Feature: domain Description: Rep_trans Location: 2661004-2661616 bp Feature: domain Description: Rep_trans Location: 2661 004-2661 61 6 bp Feature: gene Location: 2662573-2664483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2662906-2663644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2662906-2663644 bp Feature: domain Description: HNHc Note: nucleases Location: 2664199-2664364 bp Feature: domain Description: HNHc Note: nucleases Location: 26641 99-2664364 bp Feature: gene Location: 2664671-2664811 bp Feature: gene Location: 2664824-2665327 bp Feature: domain Description: ArdA Location: 2664842-2665313 bp Feature: domain Description: ArdA Location: 2664842-266531 3 bp Feature: gene Location: 2665387-2665776 bp Feature: domain Description: TcpE Location: 2665405-2665705 bp Feature: domain Description: TcpE Location: 2665405-2665705 bp Feature: gene Location: 2665763-2667313 bp Feature: domain Description: AAA_10 Location: 2667092-2667275 bp Feature: domain Description: AAA_1 0 Location: 2667092-2667275 bp Feature: gene Location: 2668010-2669836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2668310-2669009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266831 0-2669009 bp Feature: gene Location: 2669970-2670890 bp Feature: domain Description: AAA_10 Location: 2669976-2670855 bp Feature: domain Description: AAA_1 0 Location: 2669976-2670855 bp Feature: gene Location: 2670895-2673018 bp Feature: gene Location: 2730788-2732062 bp Feature: domain Description: PRK09290 Location: 2730806-2732054 bp Feature: domain Description: PRK09290 Location: 2730806-2732054 bp Feature: gene Location: 2732163-2732477 bp Feature: domain Description: AlbA_2 Location: 2732202-2732373 bp Feature: domain Description: AlbA_2 Location: 2732202-2732373 bp Feature: gene Location: 2732623-2734119 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2733031-2733487 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2733031 -2733487 bp Feature: gene Location: 2734297-2734776 bp Feature: domain Description: DUF3841 Location: 2734306-2734681 bp Feature: domain Description: DUF3841 Location: 2734306-2734681 bp Feature: gene Location: 2734943-2735092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), AAA_10 (pfam12846), CcmA (COG4133), AcrR (COG1309)
GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), Zeta_toxin (pfam06414), TcpE (pfam12648), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)

Seq: WEFS01000004.1 Enterococcus faecium strain VRECG24, whole genome shotgun sequence (39430 bp)
Overview 1 RT 1: 27647-32793 bp Neighborhood of RT #1 [27647, 32822] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 27647-27808 bp Feature: gene Location: 27891-28844 bp Feature: domain Description: Tra8 Location: 27894-28821 bp Feature: domain Description: Tra8 Location: 2 7894-2 882 1 bp Feature: gene Location: 28822-30297 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 29170-29635 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 9170-2 9635 bp Feature: gene Location: 30635-32113 bp Feature: domain Description: HsdM Location: 30656-32081 bp Feature: domain Description: HsdM Location: 30656-32 081 bp Feature: gene Location: 32136-32822 bp Feature: domain Description: Rve Location: 32145-32793 bp Feature: domain Description: Rve Location: 32 145-32 793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)