myRT

myRT report for GCA_009207855.1_ASM920785v1

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Seq: WFJN01000027.1 Klebsiella pneumoniae strain 071I8 CEPHYTEN110_S46_R1.fastq_(paired)_contig_27, whole genome shotgun sequence (113853 bp)
Overview 1 RT 1: 649-7502 bp Neighborhood of RT #1 [649, 7519] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 649-1314 bp Feature: domain Description: INT_P4_C Location: 754-1312 bp Feature: domain Description: INT_P4_C Location: 754-1 31 2 bp Feature: gene Location: 1575-2015 bp Feature: domain Description: Integrase_1 Location: 1581-1797 bp Feature: domain Description: Integrase_1 Location: 1 581 -1 797 bp Feature: gene Location: 2072-4150 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2480-2924 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2480-2924 bp Feature: gene Location: 4150-6759 bp Feature: domain Description: FimD Location: 4207-6748 bp Feature: domain Description: FimD Location: 4207-6748 bp Feature: gene Location: 6791-7519 bp Feature: domain Description: FimC Location: 6839-7502 bp Feature: domain Description: FimC Location: 6839-7502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: WFJN01000099.1 Klebsiella pneumoniae strain 071I8 CEPHYTEN110_S46_R1.fastq_(paired)_contig_99, whole genome shotgun sequence (13028 bp)
Overview 1 RT 1: 2254-6808 bp Neighborhood of RT #1 [2254, 6808] umuC PRK10276 RVT-GII Feature: gene Location: 2254-3525 bp Feature: domain Description: umuC Location: 2257-3520 bp Feature: domain Description: umuC Location: 2 2 57-352 0 bp Feature: gene Location: 3525-3950 bp Feature: domain Description: PRK10276 Location: 3528-3936 bp Feature: domain Description: PRK102 76 Location: 352 8-3936 bp Feature: gene Location: 4353-5840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4758-5448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4758-5448 bp Feature: gene Location: 6074-6304 bp Feature: gene Location: 6638-6808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII