myRT

myRT report for GCA_009207935.1_ASM920793v1

Download annotations/find similar RTs

Seq: WFJS01000117.1 Klebsiella pneumoniae strain 071I10 CEPHYTEN111_S47_R1.fastq_(paired)_contig_117, whole genome shotgun sequence (20078 bp)
Overview 1 RT 1: 2270-6824 bp Neighborhood of RT #1 [2270, 6824] umuC PRK10276 RVT-GII Feature: gene Location: 2270-3541 bp Feature: domain Description: umuC Location: 2273-3536 bp Feature: domain Description: umuC Location: 2273-3536 bp Feature: gene Location: 3541-3966 bp Feature: domain Description: PRK10276 Location: 3544-3952 bp Feature: domain Description: PRK1 0276 Location: 3544-3952 bp Feature: gene Location: 4369-5856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4774-5464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4774-5464 bp Feature: gene Location: 6090-6320 bp Feature: gene Location: 6654-6824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: WFJS01000006.1 Klebsiella pneumoniae strain 071I10 CEPHYTEN111_S47_R1.fastq_(paired)_contig_6, whole genome shotgun sequence (264110 bp)
Overview 1 RT 1: 256592-263460 bp Neighborhood of RT #1 [256592, 263462] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 256592-257320 bp Feature: domain Description: FimC Location: 256640-257303 bp Feature: domain Description: FimC Location: 2 56640-2 57303 bp Feature: gene Location: 257352-259961 bp Feature: domain Description: FimD Location: 257409-259950 bp Feature: domain Description: FimD Location: 2 57409-2 59950 bp Feature: gene Location: 259961-262039 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 260369-260813 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 60369-2 60813 bp Feature: gene Location: 262096-262536 bp Feature: domain Description: Integrase_1 Location: 262102-262318 bp Feature: domain Description: Integrase_1 Location: 2 62 102 -2 62 318 bp Feature: gene Location: 262797-263462 bp Feature: domain Description: INT_P4_C Location: 262902-263460 bp Feature: domain Description: INT_P4_C Location: 2 62 902 -2 63460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)