myRT

myRT report for GCA_009299675.1_ASM929967v1

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Seq: VMNQ01000003.1 Pseudomonas aeruginosa strain PA138 NODE_3_length_211775_cov_4.112767, whole genome shotgun sequence (211775 bp)
Overview 1 RT 1: 165258-170844 bp Neighborhood of RT #1 [165258, 170844] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 165258-166094 bp Feature: domain Description: HDOD Location: 165261-166089 bp Feature: domain Description: HDOD Location: 1 65261 -1 66089 bp Feature: gene Location: 166195-167139 bp Feature: domain Description: YgfZ Location: 166204-167104 bp Feature: domain Description: YgfZ Location: 1 66204-1 671 04 bp Feature: gene Location: 168862-170181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168865-169441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 68865-1 69441 bp Feature: domain Description: YkfC Location: 169639-169795 bp Feature: domain Description: YkfC Location: 1 69639-1 69795 bp Feature: domain Description: HNH Note: nucleases Location: 169978-170116 bp Feature: domain Description: HNH Note: nucleases Location: 1 69978-1 701 1 6 bp Feature: gene Location: 170257-170511 bp Feature: domain Description: SdhE Location: 170263-170503 bp Feature: domain Description: SdhE Location: 1 70263-1 70503 bp Feature: gene Location: 170650-170844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: VMNQ01000005.1 Pseudomonas aeruginosa strain PA138 NODE_5_length_156272_cov_4.769394, whole genome shotgun sequence (156272 bp)
Overview 1 RT 1: 33702-44557 bp 2 RT 2: 60815-69635 bp Neighborhood of RT #1 [33702, 44559] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [60815, 69664] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 33702-33866 bp Feature: gene Location: 34252-35373 bp Feature: domain Description: COG3177 Location: 34270-35362 bp Feature: domain Description: COG3177 Location: 342 70-35362 bp Feature: gene Location: 36096-37781 bp Feature: domain Description: RVT_N Location: 36153-36393 bp Feature: domain Description: RVT_N Location: 36153-36393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36441-37077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36441-37077 bp Feature: domain Description: GIIM Note: maturase Location: 37131-37362 bp Feature: domain Description: GIIM Note: maturase Location: 37131-37362 bp Feature: domain Description: HNH Note: nucleases Location: 37614-37752 bp Feature: domain Description: HNH Note: nucleases Location: 37614-37752 bp Feature: gene Location: 38862-42599 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 38970-39627 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 38970-3962 7 bp Feature: domain Description: PRK09776 Location: 39840-40311 bp Feature: domain Description: PRK09776 Location: 39840-40311 bp Feature: domain Description: PAS Location: 40368-40893 bp Feature: domain Description: PAS Location: 40368-40893 bp Feature: domain Description: PRK10060 Location: 40905-42549 bp Feature: domain Description: PRK10060 Location: 40905-42 549 bp Feature: gene Location: 42706-44559 bp Feature: domain Description: PRK05658 Location: 42718-44557 bp Feature: domain Description: PRK05658 Location: 42 718-44557 bp Feature: gene Location: 60815-62029 bp Feature: domain Description: PRK10770 Location: 60827-62021 bp Feature: domain Description: PRK10770 Location: 6082 7-62 02 1 bp Feature: gene Location: 62088-64859 bp Feature: domain Description: LptD Location: 62283-64845 bp Feature: domain Description: LptD Location: 62 2 83-64845 bp Feature: gene Location: 64992-66704 bp Feature: domain Description: RVT_N Location: 65049-65292 bp Feature: domain Description: RVT_N Location: 65049-652 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65337-65973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65337-65973 bp Feature: domain Description: YkfC Location: 66183-66333 bp Feature: domain Description: YkfC Location: 66183-66333 bp Feature: domain Description: HNH Note: nucleases Location: 66510-66648 bp Feature: domain Description: HNH Note: nucleases Location: 66510-66648 bp Feature: gene Location: 67977-68993 bp Feature: domain Description: COG3178 Location: 67980-68979 bp Feature: domain Description: COG3178 Location: 67980-68979 bp Feature: gene Location: 68990-69664 bp Feature: domain Description: NTP_transferase_like_1 Location: 68996-69635 bp Feature: domain Description: NTP_transferase_like_1 Location: 68996-69635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: VMNQ01000062.1 Pseudomonas aeruginosa strain PA138 NODE_62_length_38184_cov_4.278871, whole genome shotgun sequence (38184 bp)
Overview 1 RT 1: 20-3229 bp Neighborhood of RT #1 [20, 3229] DUF772 RVT-GII GIIM Feature: gene Location: 20-661 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 170-3 65 bp Feature: gene Location: 1050-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263 -1920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: gene Location: 2468-2866 bp Feature: gene Location: 3050-3229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: VMNQ01000066.1 Pseudomonas aeruginosa strain PA138 NODE_66_length_36122_cov_6.160578, whole genome shotgun sequence (36122 bp)
Overview 1 RT 1: 1875-9186 bp Neighborhood of RT #1 [1875, 10241] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1875-3014 bp Feature: domain Description: AAA_21 Location: 1947-2016 bp Feature: domain Description: AAA_21 Location: 194 7-2016 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: domain Description: AAA_21 Location: 24 90-2820 bp Feature: gene Location: 3014-3571 bp Feature: gene Location: 3568-6588 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4063-4534 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 063-4 534 bp Feature: gene Location: 6585-8366 bp Feature: domain Description: YeeA Location: 7452-8232 bp Feature: domain Description: YeeA Location: 74 52-8232 bp Feature: gene Location: 8370-10241 bp Feature: domain Description: DUF262 Location: 8418-9186 bp Feature: domain Description: DUF262 Location: 84 18-9186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)