myRT

myRT report for GCA_009299685.1_ASM929968v1

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Seq: VMNR01000239.1 Pseudomonas aeruginosa strain PA141 NODE_239_length_8257_cov_3.449569, whole genome shotgun sequence (8257 bp)
Overview 1 RT 1: 3744-7837 bp Neighborhood of RT #1 [3744, 7863] ABC_phnC IS5 RVT-GII GIIM IS5 Feature: gene Location: 3744-4571 bp Feature: domain Description: ABC_phnC Location: 3774-4488 bp Feature: domain Description: ABC_phnC Location: 3774-4488 bp Feature: gene Location: 5033-5572 bp Feature: domain Description: IS5 Location: 5222-5549 bp Feature: domain Description: IS5 Location: 5222-5549 bp Feature: gene Location: 6065-7333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6278-6935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6278-6935 bp Feature: domain Description: GIIM Note: maturase Location: 7013-7235 bp Feature: domain Description: GIIM Note: maturase Location: 701 3-7235 bp Feature: gene Location: 7405-7863 bp Feature: domain Description: IS5 Location: 7408-7837 bp Feature: domain Description: IS5 Location: 7408-7837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: VMNR01000049.1 Pseudomonas aeruginosa strain PA141 NODE_49_length_35611_cov_3.226384, whole genome shotgun sequence (35611 bp)
Overview 1 RT 1: 27772-30696 bp Neighborhood of RT #1 [27772, 30696] PHA02517 RVT-GII GIIM Feature: gene Location: 27772-27936 bp Feature: gene Location: 28035-28427 bp Feature: domain Description: PHA02517 Location: 28047-28416 bp Feature: domain Description: PHA02 517 Location: 2 8047-2 8416 bp Feature: gene Location: 28592-30115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28865-29597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8865-2 9597 bp Feature: domain Description: GIIM Note: maturase Location: 29672-29897 bp Feature: domain Description: GIIM Note: maturase Location: 2 9672 -2 9897 bp Feature: gene Location: 30255-30485 bp Feature: gene Location: 30529-30696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VMNR01000072.1 Pseudomonas aeruginosa strain PA141 NODE_72_length_29277_cov_2.346449, whole genome shotgun sequence (29277 bp)
Overview 1 RT 1: 5259-15558 bp Neighborhood of RT #1 [5259, 15569] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 5259-7112 bp Feature: domain Description: PRK05658 Location: 5271-7110 bp Feature: domain Description: PRK05658 Location: 5271-7110 bp Feature: gene Location: 7219-10956 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7327-7984 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73 27-7984 bp Feature: domain Description: PRK09776 Location: 8197-8668 bp Feature: domain Description: PRK09776 Location: 8197-8668 bp Feature: domain Description: PAS Location: 8740-9250 bp Feature: domain Description: PAS Location: 8740-9250 bp Feature: domain Description: PRK10060 Location: 9259-10906 bp Feature: domain Description: PRK10060 Location: 9259-10906 bp Feature: gene Location: 12037-13722 bp Feature: RT Description: RVT_N Location: 12094-12334 bp Feature: RT Description: RVT_N Location: 12094-123 3 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12382-13018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 82-13 018 bp Feature: domain Description: GIIM Note: maturase Location: 13072-13303 bp Feature: domain Description: GIIM Note: maturase Location: 13 072-13 3 03 bp Feature: domain Description: HNH Note: nucleases Location: 13555-13693 bp Feature: domain Description: HNH Note: nucleases Location: 13 555-13 693 bp Feature: gene Location: 14025-14186 bp Feature: gene Location: 14448-15569 bp Feature: domain Description: COG3177 Location: 14466-15558 bp Feature: domain Description: COG3 177 Location: 14466-15558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein ), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)