myRT

myRT report for GCA_009360675.1_ASM936067v1

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Seq: SPEU01000028.1 Pseudomonas sp. isolate GV_Bin_12 Contig_000000001798, whole genome shotgun sequence (290698 bp)
Overview 1 RT 1: 1450-6825 bp Neighborhood of RT #1 [1450, 6923] lnt IS5 RVT_N RVT-GII GIIM IS5 IS5 Feature: gene Location: 1450-2889 bp Feature: domain Description: lnt Location: 1456-2860 bp Feature: domain Description: lnt Location: 1 456-2860 bp Feature: gene Location: 2927-3196 bp Feature: domain Description: IS5 Location: 2993-3185 bp Feature: domain Description: IS5 Location: 2993-31 85 bp Feature: gene Location: 3789-5294 bp Feature: domain Description: RVT_N Location: 3870-4095 bp Feature: domain Description: RVT_N Location: 3870-4095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4146-4788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 46-4788 bp Feature: domain Description: GIIM Note: maturase Location: 4839-5073 bp Feature: domain Description: GIIM Note: maturase Location: 4839-5073 bp Feature: gene Location: 5385-5879 bp Feature: domain Description: IS5 Location: 5391-5616 bp Feature: domain Description: IS5 Location: 5391 -561 6 bp Feature: gene Location: 6252-6923 bp Feature: domain Description: IS5 Location: 6459-6825 bp Feature: domain Description: IS5 Location: 6459-6825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lnt (TIGR00546), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: SPEU01000032.1 Pseudomonas sp. isolate GV_Bin_12 Contig_000000001834, whole genome shotgun sequence (226052 bp)
Overview 1 RT 1: 58256-65527 bp Neighborhood of RT #1 [58256, 65541] PBP2_HisK PRK12437 TlpA_like_family RVT-UG15 DEAH_box_HrpB IV_pilus_PilQ Feature: gene Location: 58256-58990 bp Feature: domain Description: PBP2_HisK Location: 58331-58973 bp Feature: domain Description: PBP2 _HisK Location: 58331-58973 bp Feature: gene Location: 58995-59801 bp Feature: domain Description: PRK12437 Location: 59004-59310 bp Feature: domain Description: PRK12 437 Location: 59004-59310 bp Feature: domain Description: TlpA_like_family Location: 59412-59748 bp Feature: domain Description: TlpA_like_family Location: 59412 -59748 bp Feature: gene Location: 60673-61974 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 60778-61192 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 60778-61192 bp Feature: gene Location: 62090-64612 bp Feature: domain Description: DEAH_box_HrpB Location: 62102-64607 bp Feature: domain Description: DEAH_box_HrpB Location: 62 102 -64607 bp Feature: gene Location: 64927-65541 bp Feature: domain Description: IV_pilus_PilQ Location: 65317-65527 bp Feature: domain Description: IV_pilus_PilQ Location: 65317-6552 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_HisK (cd13704), PRK12437 (prolipoprotein diacylglyceryl transferase; Reviewed), TlpA_like_family (cd02966), RVT-UG15, DEAH_box_HrpB (TIGR01970), IV_pilus_PilQ (TIGR02515)