myRT

myRT report for GCA_009361925.1_ASM936192v1

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Seq: VOTO01000011.1 Escherichia coli strain WU1266 NODE_11_length_180948_cov_330.932477, whole genome shotgun sequence (180948 bp)
Overview 1 RT 1: 78620-82561 bp Neighborhood of RT #1 [78620, 82561] RVT-Retrons Feature: gene Location: 78620-78859 bp Feature: gene Location: 79166-79342 bp Feature: gene Location: 79415-81187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79574-80192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79574-801 92 bp Feature: gene Location: 81209-81376 bp Feature: gene Location: 81422-82561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: VOTO01000040.1 Escherichia coli strain WU1266 NODE_40_length_24774_cov_287.880350, whole genome shotgun sequence (24774 bp)
Overview 1 RT 1: 19325-23053 bp Neighborhood of RT #1 [19325, 23058] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 19325-19531 bp Feature: gene Location: 19865-20074 bp Feature: gene Location: 20209-22110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20476-21307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0476-2 1307 bp Feature: domain Description: Intron_maturas2 Location: 21421-21679 bp Feature: domain Description: Intron_maturas2 Location: 2 142 1-2 1679 bp Feature: domain Description: HNHc Note: nucleases Location: 21853-22015 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1853-2 2 015 bp Feature: gene Location: 22305-22757 bp Feature: domain Description: PRK13732 Location: 22311-22755 bp Feature: domain Description: PRK13732 Location: 2 2 311-2 2 755 bp Feature: gene Location: 22825-23058 bp Feature: domain Description: DUF905 Location: 22855-23053 bp Feature: domain Description: DUF905 Location: 2 2 855-2 3053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: VOTO01000050.1 Escherichia coli strain WU1266 NODE_50_length_11805_cov_332.605900, whole genome shotgun sequence (11805 bp)
Overview 1 RT 1: 418-4662 bp Neighborhood of RT #1 [418, 4662] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 418-1320 bp Feature: domain Description: Macro_Appr_pase Location: 436-949 bp Feature: domain Description: Macro_Appr_pase Location: 43 6-949 bp Feature: gene Location: 1329-1913 bp Feature: domain Description: Caudo_TAP Location: 1545-1902 bp Feature: domain Description: Caudo_TAP Location: 1545-1902 bp Feature: gene Location: 2026-3396 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2254-2860 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2254-2860 bp Feature: gene Location: 3374-4078 bp Feature: domain Description: SLATT_5 Location: 3536-4046 bp Feature: domain Description: SLATT_5 Location: 3 53 6-4046 bp Feature: gene Location: 4486-4662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)