myRT

myRT report for GCA_009362065.1_ASM936206v1

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Seq: VOTG01000102.1 Escherichia coli strain WU1036 NODE_103_length_1280_cov_1.652535, whole genome shotgun sequence (1280 bp)
Overview 1 RT 1: 261-585 bp Neighborhood of RT #1 [261, 1277] RVT-UNC Feature: gene Location: 261-1277 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 375-585 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 375-585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-UG23/RVT-UG7(RVT-UNC)

Seq: VOTG01000104.1 Escherichia coli strain WU1036 NODE_105_length_1233_cov_1.020636, whole genome shotgun sequence (1233 bp)
Overview 1 RT 1: 129-1193 bp Neighborhood of RT #1 [129, 1231] RVT-UNC Feature: gene Location: 129-491 bp Feature: gene Location: 518-1231 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 611-1193 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 611-1193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: VOTG01000010.1 Escherichia coli strain WU1036 NODE_10_length_180948_cov_485.119267, whole genome shotgun sequence (180948 bp)
Overview 1 RT 1: 78620-82561 bp Neighborhood of RT #1 [78620, 82561] RVT-Retrons Feature: gene Location: 78620-78859 bp Feature: gene Location: 79166-79342 bp Feature: gene Location: 79415-81187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79574-80192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79574-80192 bp Feature: gene Location: 81209-81376 bp Feature: gene Location: 81422-82561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: VOTG01000040.1 Escherichia coli strain WU1036 NODE_40_length_24774_cov_363.154634, whole genome shotgun sequence (24774 bp)
Overview 1 RT 1: 19325-23053 bp Neighborhood of RT #1 [19325, 23058] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 19325-19531 bp Feature: gene Location: 19865-20074 bp Feature: gene Location: 20209-22110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20476-21307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204 76-21307 bp Feature: domain Description: Intron_maturas2 Location: 21421-21679 bp Feature: domain Description: Intron_maturas2 Location: 214 21-21679 bp Feature: domain Description: HNHc Note: nucleases Location: 21853-22015 bp Feature: domain Description: HNHc Note: nucleases Location: 21853-22015 bp Feature: gene Location: 22305-22757 bp Feature: domain Description: PRK13732 Location: 22311-22755 bp Feature: domain Description: PRK13732 Location: 22311-22755 bp Feature: gene Location: 22825-23058 bp Feature: domain Description: DUF905 Location: 22855-23053 bp Feature: domain Description: DUF905 Location: 22855-23053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: VOTG01000049.1 Escherichia coli strain WU1036 NODE_49_length_11805_cov_490.901262, whole genome shotgun sequence (11805 bp)
Overview 1 RT 1: 7144-11017 bp Neighborhood of RT #1 [7144, 11388] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7144-7320 bp Feature: gene Location: 7728-8432 bp Feature: domain Description: SLATT_5 Location: 7890-8400 bp Feature: domain Description: SLATT_5 Location: 7890-8400 bp Feature: gene Location: 8410-9780 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8638-9244 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8638-9244 bp Feature: gene Location: 9893-10477 bp Feature: domain Description: Caudo_TAP Location: 10109-10466 bp Feature: domain Description: Caudo_TAP Location: 10109-10466 bp Feature: gene Location: 10486-11388 bp Feature: domain Description: Macro_Appr_pase Location: 10504-11017 bp Feature: domain Description: Macro_Appr_pase Location: 105 04-11017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)