myRT

myRT report for GCA_009362145.1_ASM936214v1

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Seq: VOTD01000024.1 Escherichia coli strain WU1025 NODE_24_length_54255_cov_335.357968, whole genome shotgun sequence (54255 bp)
Overview 1 RT 1: 1-1027 bp Neighborhood of RT #1 [1, 1035] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: gene Location: 291-602 bp Feature: domain Description: PRK10173 Location: 294-513 bp Feature: domain Description: PRK1 01 73 Location: 294-51 3 bp Feature: gene Location: 586-1035 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Feature: domain Description: PRK1 01 73 Location: 589-1 027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: VOTD01000029.1 Escherichia coli strain WU1025 NODE_29_length_45948_cov_336.539818, whole genome shotgun sequence (45948 bp)
Overview 1 RT 1: 50-2883 bp Neighborhood of RT #1 [50, 2883] RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 50-1420 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 311-767 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 311-767 bp Feature: gene Location: 1522-2559 bp Feature: domain Description: HTH_29 Location: 1618-1789 bp Feature: domain Description: HTH_2 9 Location: 1618-1789 bp Feature: domain Description: HTH_33 Location: 1822-1984 bp Feature: domain Description: HTH_33 Location: 182 2 -1984 bp Feature: domain Description: DDE_3 Location: 2026-2455 bp Feature: domain Description: DDE_3 Location: 2 02 6-2 455 bp Feature: gene Location: 2593-2883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: VOTD01000060.1 Escherichia coli strain WU1025 NODE_60_length_3615_cov_332.028265, whole genome shotgun sequence (3615 bp)
Overview 1 RT 1: 1438-3367 bp Neighborhood of RT #1 [1438, 3612] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1438-1842 bp Feature: domain Description: InsE Location: 1468-1804 bp Feature: domain Description: InsE Location: 1468-1804 bp Feature: gene Location: 1871-2227 bp Feature: domain Description: PHA02517 Location: 1874-2183 bp Feature: domain Description: PHA02517 Location: 1874-2183 bp Feature: gene Location: 2344-3612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2362-3094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 62-3 094 bp Feature: domain Description: GIIM Note: maturase Location: 3169-3367 bp Feature: domain Description: GIIM Note: maturase Location: 3 169-3 3 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VOTD01000080.1 Escherichia coli strain WU1025 NODE_80_length_1329_cov_688.015974, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 2-1328 bp Neighborhood of RT #1 [2, 1327] PHA02517 RVT-GII Feature: gene Location: 2-409 bp Feature: domain Description: PHA02517 Location: 5-344 bp Feature: domain Description: PHA02517 Location: 5-34 4 bp Feature: gene Location: 1001-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274 -1328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII