myRT

myRT report for GCA_009362735.1_ASM936273v1

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Seq: WHNP01000103.1 Paraburkholderia sp. CNPSo 3157 scaffold103.1, whole genome shotgun sequence (19313 bp)
Overview 1 RT 1: 16329-19025 bp Neighborhood of RT #1 [16329, 19036] GatA Rve RVT-GII Feature: gene Location: 16329-17711 bp Feature: domain Description: GatA Location: 16428-17700 bp Feature: domain Description: GatA Location: 1 6428-1 7700 bp Feature: gene Location: 17677-17937 bp Feature: domain Description: Rve Location: 17728-17902 bp Feature: domain Description: Rve Location: 1 7728-1 7902 bp Feature: gene Location: 18431-19036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18635-19025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8635-1 9025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GatA (COG0154), Rve (COG3316), RVT-GII

Seq: WHNP01000115.1 Paraburkholderia sp. CNPSo 3157 scaffold115.1, whole genome shotgun sequence (14707 bp)
Overview 1 RT 1: 1811-6433 bp Neighborhood of RT #1 [1811, 6433] RVT_N RVT-GII GIIM KOG1080 Feature: gene Location: 1811-2068 bp Feature: gene Location: 2192-2854 bp Feature: gene Location: 2928-4631 bp Feature: domain Description: RVT_N Location: 2982-3225 bp Feature: domain Description: RVT_N Location: 2 982 -32 2 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270-3909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 70-3909 bp Feature: domain Description: GIIM Note: maturase Location: 3960-4194 bp Feature: domain Description: GIIM Note: maturase Location: 3960-4194 bp Feature: gene Location: 5568-6011 bp Feature: domain Description: KOG1080 Location: 5574-5991 bp Feature: domain Description: KOG1080 Location: 5574-5991 bp Feature: gene Location: 6149-6433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KOG1080 (KOG1080, Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases )

Seq: WHNP01000147.1 Paraburkholderia sp. CNPSo 3157 scaffold147.1, whole genome shotgun sequence (7893 bp)
Overview 1 RT 1: 2-3665 bp Neighborhood of RT #1 [2, 3665] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-UG12 Feature: gene Location: 2-475 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11-320 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11-3 20 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 341-452 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 41-452 bp Feature: gene Location: 681-2303 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1014-1464 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1014-1464 bp Feature: gene Location: 2346-2552 bp Feature: gene Location: 2655-3665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-UG12

Seq: WHNP01000193.1 Paraburkholderia sp. CNPSo 3157 scaffold193.1, whole genome shotgun sequence (2184 bp)
Overview 1 RT 1: 2-2012 bp Neighborhood of RT #1 [2, 2089] PHA02517 RVT-GII GIIM Feature: gene Location: 2-628 bp Feature: domain Description: PHA02517 Location: 8-299 bp Feature: domain Description: PHA02517 Location: 8-299 bp Feature: gene Location: 845-2089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 9-1703 bp Feature: domain Description: GIIM Note: maturase Location: 1787-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1787-2012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: WHNP01000026.1 Paraburkholderia sp. CNPSo 3157 scaffold26.1, whole genome shotgun sequence (123234 bp)
Overview 1 RT 1: 120319-123231 bp Neighborhood of RT #1 [120319, 123231] YaeQ GLOD5 RVT-GII Feature: gene Location: 120319-120897 bp Feature: domain Description: YaeQ Location: 120322-120823 bp Feature: domain Description: YaeQ Location: 120322-120823 bp Feature: gene Location: 120940-121353 bp Feature: domain Description: GLOD5 Location: 120961-121333 bp Feature: domain Description: GLOD5 Location: 120961-121333 bp Feature: gene Location: 121740-122831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122073-122688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122073-122688 bp Feature: gene Location: 122902-123231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YaeQ (pfam07152), GLOD5 (cd07253), RVT-GII

Seq: WHNP01000032.1 Paraburkholderia sp. CNPSo 3157 scaffold32.1, whole genome shotgun sequence (103093 bp)
Overview 1 RT 1: 2-3752 bp Neighborhood of RT #1 [2, 3781] RVT_N RVT-GII GIIM HNHc PRK08243 HTH_18 Feature: gene Location: 2-241 bp Feature: gene Location: 475-2241 bp Feature: domain Description: RVT_N Location: 529-772 bp Feature: domain Description: RVT_N Location: 529-772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817-1456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817-1456 bp Feature: domain Description: GIIM Note: maturase Location: 1507-1741 bp Feature: domain Description: GIIM Note: maturase Location: 1507-1741 bp Feature: domain Description: HNHc Note: nucleases Location: 1972-2116 bp Feature: domain Description: HNHc Note: nucleases Location: 1972-2116 bp Feature: gene Location: 2460-3632 bp Feature: domain Description: PRK08243 Location: 2463-3621 bp Feature: domain Description: PRK08243 Location: 246 3-36 21 bp Feature: gene Location: 3647-3781 bp Feature: domain Description: HTH_18 Location: 3659-3752 bp Feature: domain Description: HTH_18 Location: 36 59-3752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK08243 (4-hydroxybenzoate 3-monooxygenase; Validated), HTH_18 (pfam12833)

Seq: WHNP01000006.1 Paraburkholderia sp. CNPSo 3157 scaffold6.1, whole genome shotgun sequence (299017 bp)
Overview 1 RT 1: 197375-205471 bp Neighborhood of RT #1 [197375, 205473] pgsA uvrC RVT_N RVT-GII GIIM HNHc EarP PRK00529 Feature: gene Location: 197375-197965 bp Feature: domain Description: pgsA Location: 197384-197942 bp Feature: domain Description: pgsA Location: 197 384-197 942 bp Feature: gene Location: 198122-200296 bp Feature: domain Description: uvrC Location: 198212-200294 bp Feature: domain Description: uvrC Location: 198212-200294 bp Feature: gene Location: 200469-202070 bp Feature: domain Description: RVT_N Location: 200472-200664 bp Feature: domain Description: RVT_N Location: 20047 2-200664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200715-201363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2007 15-201363 bp Feature: domain Description: GIIM Note: maturase Location: 201417-201648 bp Feature: domain Description: GIIM Note: maturase Location: 201417 -201648 bp Feature: domain Description: HNHc Note: nucleases Location: 201879-202032 bp Feature: domain Description: HNHc Note: nucleases Location: 20187 9-202032 bp Feature: gene Location: 203365-204546 bp Feature: domain Description: EarP Location: 203413-204529 bp Feature: domain Description: EarP Location: 203413-204529 bp Feature: gene Location: 204748-205473 bp Feature: domain Description: PRK00529 Location: 204919-205471 bp Feature: domain Description: PRK00529 Location: 204919-20547 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pgsA (TIGR00560), uvrC (TIGR00194), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), EarP (TIGR03837), PRK00529 (elongation factor P; Validated)