myRT

myRT report for GCA_009362785.1_ASM936278v1

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Seq: WHNQ01000114.1 Paraburkholderia sp. CNPSo 3155 scaffold_113, whole genome shotgun sequence (6760 bp)
Overview 1 RT 1: 2449-6243 bp Neighborhood of RT #1 [2449, 6758] DDE_Tnp_Tn3 COG3547 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 2449-3123 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2455-3121 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2455-31 21 bp Feature: gene Location: 3367-3828 bp Feature: domain Description: COG3547 Location: 3373-3766 bp Feature: domain Description: COG3547 Location: 3373-3766 bp Feature: gene Location: 4146-4931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4152-4398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 52-4398 bp Feature: domain Description: GIIM Note: maturase Location: 4449-4683 bp Feature: domain Description: GIIM Note: maturase Location: 4449-4683 bp Feature: gene Location: 5187-6758 bp Feature: domain Description: Resolvase Location: 5256-5544 bp Feature: domain Description: Resolvase Location: 5256-5544 bp Feature: domain Description: Recombinase Location: 5637-5994 bp Feature: domain Description: Recombinase Location: 5637-5994 bp Feature: domain Description: Zn_ribbon_recom Location: 6039-6243 bp Feature: domain Description: Zn_ribbon_recom Location: 6039-6243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: WHNQ01000182.1 Paraburkholderia sp. CNPSo 3155 scaffold_181, whole genome shotgun sequence (1361 bp)
Overview 1 RT 1: 3-1355 bp Neighborhood of RT #1 [3, 1355] RVT-GII Feature: gene Location: 3-674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76-675 bp Feature: gene Location: 740-1081 bp Feature: gene Location: 1089-1355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WHNQ01000201.1 Paraburkholderia sp. CNPSo 3155 scaffold_200, whole genome shotgun sequence (962 bp)
Overview 1 RT 1: 102-711 bp Neighborhood of RT #1 [102, 959] RVT-GII GIIM Feature: gene Location: 102-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105-438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105-43 8 bp Feature: domain Description: GIIM Note: maturase Location: 534-711 bp Feature: domain Description: GIIM Note: maturase Location: 53 4-711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WHNQ01000048.1 Paraburkholderia sp. CNPSo 3155 scaffold_47, whole genome shotgun sequence (31132 bp)
Overview 1 RT 1: 23-1712 bp Neighborhood of RT #1 [23, 1723] RVT_N RVT-GII NADAR Feature: gene Location: 23-214 bp Feature: gene Location: 248-1003 bp Feature: domain Description: RVT_N Location: 302-536 bp Feature: domain Description: RVT_N Location: 302-536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590-968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590-968 bp Feature: gene Location: 1044-1457 bp Feature: gene Location: 1583-1723 bp Feature: domain Description: NADAR Location: 1610-1712 bp Feature: domain Description: NADAR Location: 1610-1712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, NADAR (cl21532)

Seq: WHNQ01000053.1 Paraburkholderia sp. CNPSo 3155 scaffold_52, whole genome shotgun sequence (27591 bp)
Overview 1 RT 1: 18008-23502 bp Neighborhood of RT #1 [18008, 23645] PHA02517 Histone_HNS Histone_HNS RVT-UG7 DDE_Tnp_1 ABC_ATPase Feature: gene Location: 18008-18838 bp Feature: domain Description: PHA02517 Location: 18119-18824 bp Feature: domain Description: PHA025 17 Location: 18119-18824 bp Feature: gene Location: 18962-19462 bp Feature: domain Description: Histone_HNS Location: 18983-19271 bp Feature: domain Description: Histone_HNS Location: 18983-19271 bp Feature: domain Description: Histone_HNS Location: 19310-19448 bp Feature: domain Description: Histone_HNS Location: 19310-19448 bp Feature: gene Location: 19490-20416 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 20045-20363 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 20045 -20363 bp Feature: gene Location: 20441-21436 bp Feature: domain Description: DDE_Tnp_1 Location: 20870-21392 bp Feature: domain Description: DDE_Tnp_1 Location: 20870-21392 bp Feature: gene Location: 21816-23645 bp Feature: domain Description: ABC_ATPase Location: 21855-23502 bp Feature: domain Description: ABC_ATPase Location: 2185 5 -235 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), Histone_HNS (pfam00816), RVT-UG7, DDE_Tnp_1 (pfam01609), ABC_ATPase (pfam09818)

Seq: WHNQ01000070.1 Paraburkholderia sp. CNPSo 3155 scaffold_69, whole genome shotgun sequence (14551 bp)
Overview 1 RT 1: 11108-14529 bp Neighborhood of RT #1 [11108, 14529] RES SRAP RVT_N RVT-GII Feature: gene Location: 11108-11551 bp Feature: domain Description: RES Location: 11117-11456 bp Feature: domain Description: RES Location: 11117-11456 bp Feature: gene Location: 12058-12564 bp Feature: domain Description: SRAP Location: 12181-12556 bp Feature: domain Description: SRAP Location: 12181-12556 bp Feature: gene Location: 13555-14304 bp Feature: domain Description: RVT_N Location: 13603-13846 bp Feature: domain Description: RVT_N Location: 136 03-13846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13891-14269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13891-1426 9 bp Feature: gene Location: 14338-14529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RES (smart00953), SRAP (pfam02586), RVT_N (pfam13655), RVT-GII

Seq: WHNQ01000072.1 Paraburkholderia sp. CNPSo 3155 scaffold_71, whole genome shotgun sequence (13939 bp)
Overview 1 RT 1: 12206-13566 bp Neighborhood of RT #1 [12206, 13601] ribofla_fusion RVT-GII GIIM HNHc Feature: gene Location: 12206-12376 bp Feature: domain Description: ribofla_fusion Location: 12212-12365 bp Feature: domain Description: ribofla_fusion Location: 12212-12365 bp Feature: gene Location: 12392-12580 bp Feature: gene Location: 12666-13601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12699-12894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12699-12894 bp Feature: domain Description: GIIM Note: maturase Location: 12945-13179 bp Feature: domain Description: GIIM Note: maturase Location: 12945-1317 9 bp Feature: domain Description: HNHc Note: nucleases Location: 13410-13566 bp Feature: domain Description: HNHc Note: nucleases Location: 13410-13566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribofla_fusion (TIGR02464), RVT-GII, GIIM (pfam08388), HNHc (smart00507)