myRT

myRT report for GCA_009377275.1_ASM937727v1

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Seq: VOQB01000018.1 Shewanella sp. YLB-07 NODE_18_length_141589_cov_38.066849, whole genome shotgun sequence (141589 bp)
Overview 1 RT 1: 1328-4622 bp Neighborhood of RT #1 [1328, 4622] RVT-GII GIIM KOG1347 Feature: gene Location: 1328-1675 bp Feature: gene Location: 1939-2160 bp Feature: gene Location: 2275-3624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2557-3175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2557-31 75 bp Feature: domain Description: GIIM Note: maturase Location: 3223-3427 bp Feature: domain Description: GIIM Note: maturase Location: 3223-3427 bp Feature: gene Location: 3713-4126 bp Feature: domain Description: KOG1347 Location: 3812-4052 bp Feature: domain Description: KOG1 347 Location: 381 2-4052 bp Feature: gene Location: 4236-4622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG1347 (KOG1347, Uncharacterized membrane protein, predicted efflux pump )

Seq: VOQB01000029.1 Shewanella sp. YLB-07 NODE_29_length_21690_cov_62.319857, whole genome shotgun sequence (21690 bp)
Overview 1 RT 1: 3-4084 bp Neighborhood of RT #1 [3, 4084] Rhs_assc_core YwqJ-deaminase RVT-GII Rve Feature: gene Location: 3-1073 bp Feature: domain Description: Rhs_assc_core Location: 6-243 bp Feature: domain Description: Rhs_assc_core Location: 6-2 43 bp Feature: domain Description: YwqJ-deaminase Location: 714-1011 bp Feature: domain Description: YwqJ-deaminase Location: 714-1011 bp Feature: gene Location: 1358-1603 bp Feature: gene Location: 1725-2738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2007-2625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 007-2 62 5 bp Feature: gene Location: 2776-3483 bp Feature: domain Description: Rve Location: 2779-3412 bp Feature: domain Description: Rve Location: 2 779-3412 bp Feature: gene Location: 3944-4084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Rve (COG3316), Rhs_assc_core (TIGR03696), YwqJ-deaminase (pfam14431)

Seq: VOQB01000007.1 Shewanella sp. YLB-07 NODE_7_length_343481_cov_36.979159, whole genome shotgun sequence (343481 bp)
Overview 1 RT 1: 194548-200647 bp Neighborhood of RT #1 [194548, 200655] LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM DHPS-like_MBL-fold Feature: gene Location: 194548-196110 bp Feature: domain Description: LZ_Tnp_IS66 Location: 194641-194800 bp Feature: domain Description: LZ_Tnp_IS66 Location: 194641-194800 bp Feature: domain Description: DDE_Tnp_IS66 Location: 195064-195919 bp Feature: domain Description: DDE_Tnp_IS66 Location: 195064-195919 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 195940-196048 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 195940-196048 bp Feature: gene Location: 196416-197393 bp Feature: gene Location: 197612-199033 bp Feature: RT Description: RVT_N Location: 197660-197903 bp Feature: RT Description: RVT_N Location: 197660-197903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197948-198575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197948-198575 bp Feature: domain Description: GIIM Note: maturase Location: 198632-198860 bp Feature: domain Description: GIIM Note: maturase Location: 19863 2-198860 bp Feature: gene Location: 199440-199583 bp Feature: gene Location: 199810-200655 bp Feature: domain Description: DHPS-like_MBL-fold Location: 199819-200647 bp Feature: domain Description: DHPS-like_MBL-fold Location: 199819-200647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DHPS-like_MBL-fold (cd07713)