myRT

myRT report for GCA_009380025.1_ASM938002v1

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Seq: WHSP01000014.1 Gemmatimonas sp. isolate Dino_bin9 NODE_14_length_52693_cov_6.924677, whole genome shotgun sequence (52693 bp)
Overview 1 RT 1: 15812-21386 bp Neighborhood of RT #1 [15812, 21448] ADOP Recombinase Zn_ribbon_recom RVT-GII YtcJ HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 15812-16027 bp Feature: domain Description: ADOP Location: 15851-16010 bp Feature: domain Description: ADOP Location: 1 5851 -1 601 0 bp Feature: gene Location: 15974-16144 bp Feature: gene Location: 16278-17981 bp Feature: domain Description: Recombinase Location: 16287-16539 bp Feature: domain Description: Recombinase Location: 1 6287-1 6539 bp Feature: domain Description: Zn_ribbon_recom Location: 16578-16767 bp Feature: domain Description: Zn_ribbon_recom Location: 1 6578-1 6767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17301-17553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7301 -1 7553 bp Feature: gene Location: 18137-19840 bp Feature: domain Description: YtcJ Location: 18266-19835 bp Feature: domain Description: YtcJ Location: 1 8266-1 9835 bp Feature: gene Location: 20093-21448 bp Feature: domain Description: HEAT_2 Location: 20384-20594 bp Feature: domain Description: HEAT_2 Location: 20384-20594 bp Feature: domain Description: HEAT_2 Location: 20663-20918 bp Feature: domain Description: HEAT_2 Location: 20663-2091 8 bp Feature: domain Description: HEAT_2 Location: 20942-21200 bp Feature: domain Description: HEAT_2 Location: 20942-21 200 bp Feature: domain Description: HEAT_2 Location: 21227-21386 bp Feature: domain Description: HEAT_2 Location: 21 227-21 386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, YtcJ (COG1574), HEAT_2 (pfam13646)

Seq: WHSP01000292.1 Gemmatimonas sp. isolate Dino_bin9 NODE_292_length_1835_cov_20.541573, whole genome shotgun sequence (1835 bp)
Overview 1 RT 1: 365-1766 bp Neighborhood of RT #1 [365, 1834] RVT-GII GIIM F420_cofC Feature: gene Location: 365-1072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-677 bp Feature: domain Description: GIIM Note: maturase Location: 764-998 bp Feature: domain Description: GIIM Note: maturase Location: 764-998 bp Feature: gene Location: 1183-1578 bp Feature: gene Location: 1580-1834 bp Feature: domain Description: F420_cofC Location: 1586-1766 bp Feature: domain Description: F42 0_cofC Location: 1586-1766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), F420_cofC (TIGR03552)

Seq: WHSP01000298.1 Gemmatimonas sp. isolate Dino_bin9 NODE_298_length_1562_cov_52.750498, whole genome shotgun sequence (1562 bp)
Overview 1 RT 1: 1-1469 bp Neighborhood of RT #1 [1, 1561] PRK09754 RVT-GII GIIM Feature: gene Location: 1-675 bp Feature: domain Description: PRK09754 Location: 13-676 bp Feature: domain Description: PRK09754 Location: 13 -676 bp Feature: gene Location: 839-1561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1166 bp Feature: domain Description: GIIM Note: maturase Location: 1256-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1256-1469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09754 (phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional), RVT-GII, GIIM (pfam08388)

Seq: WHSP01000306.1 Gemmatimonas sp. isolate Dino_bin9 NODE_306_length_1284_cov_10.052075, whole genome shotgun sequence (1284 bp)
Overview 1 RT 1: 112-1199 bp Neighborhood of RT #1 [112, 1282] DDE_Tnp_ISL3 RVT-GII GIIM Feature: gene Location: 112-396 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 121-316 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 121-316 bp Feature: gene Location: 602-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620-860 bp Feature: domain Description: GIIM Note: maturase Location: 977-1199 bp Feature: domain Description: GIIM Note: maturase Location: 977-1199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)

Seq: WHSP01000318.1 Gemmatimonas sp. isolate Dino_bin9 NODE_318_length_1124_cov_3.618335, whole genome shotgun sequence (1124 bp)
Overview 1 RT 1: 528-1122 bp Neighborhood of RT #1 [528, 1121] RVT-GII Feature: gene Location: 528-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894-1122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894-1122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WHSP01000408.1 Gemmatimonas sp. isolate Dino_bin9 NODE_408_length_626_cov_5.239930, whole genome shotgun sequence (626 bp)
Overview 1 RT 1: 3-405 bp Neighborhood of RT #1 [3, 482] RVT-GII GIIM Feature: gene Location: 3-482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-129 bp Feature: domain Description: GIIM Note: maturase Location: 201-405 bp Feature: domain Description: GIIM Note: maturase Location: 201-405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WHSP01000041.1 Gemmatimonas sp. isolate Dino_bin9 NODE_41_length_29229_cov_8.648111, whole genome shotgun sequence (29229 bp)
Overview 1 RT 1: 18116-22318 bp Neighborhood of RT #1 [18116, 22374] MmsB HxlR RVT-GII GIIM COG3548 Feature: gene Location: 18116-18994 bp Feature: domain Description: MmsB Location: 18131-18971 bp Feature: domain Description: MmsB Location: 18131-1897 1 bp Feature: gene Location: 19147-19506 bp Feature: domain Description: HxlR Location: 19168-19483 bp Feature: domain Description: HxlR Location: 19168-19483 bp Feature: gene Location: 20117-21481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20471-21134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047 1-21134 bp Feature: domain Description: GIIM Note: maturase Location: 21212-21422 bp Feature: domain Description: GIIM Note: maturase Location: 21212-21422 bp Feature: gene Location: 21614-21898 bp Feature: gene Location: 21985-22374 bp Feature: domain Description: COG3548 Location: 22006-22318 bp Feature: domain Description: COG3548 Location: 22006-22318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MmsB (COG2084), HxlR (pfam01638), RVT-GII, GIIM (pfam08388), COG3548 (Uncharacterized membrane protein )

Seq: WHSP01000439.1 Gemmatimonas sp. isolate Dino_bin9 NODE_439_length_547_cov_3.396341, whole genome shotgun sequence (547 bp)
Overview 1 RT 1: 3-546 bp Neighborhood of RT #1 [3, 545] RVT-GII Feature: gene Location: 3-545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204-546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII