myRT

myRT report for GCA_009389105.1_ASM938910v1

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Seq: QKPV01000010.1 Lactobacillus reuteri strain PTA6_C7 NODE_10_length_65046_cov_142.843, whole genome shotgun sequence (65046 bp)
Overview 1 RT 1: 88-4296 bp Neighborhood of RT #1 [88, 4334] RVT-GII GIIM PRK05431 Feature: gene Location: 88-543 bp Feature: gene Location: 845-1246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1 040 bp Feature: domain Description: GIIM Note: maturase Location: 1097-1244 bp Feature: domain Description: GIIM Note: maturase Location: 1 097-1 244 bp Feature: gene Location: 2777-2923 bp Feature: gene Location: 3027-4334 bp Feature: domain Description: PRK05431 Location: 3030-4296 bp Feature: domain Description: PRK05431 Location: 3030-4296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK05431 (seryl-tRNA synthetase; Provisional)

Seq: QKPV01000013.1 Lactobacillus reuteri strain PTA6_C7 NODE_13_length_50673_cov_113.304, whole genome shotgun sequence (50673 bp)
Overview 1 RT 1: 3-3055 bp Neighborhood of RT #1 [3, 3057] RVT-GII PRK06079 Feature: gene Location: 3-659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 1-657 bp Feature: gene Location: 1241-1390 bp Feature: gene Location: 2293-3057 bp Feature: domain Description: PRK06079 Location: 2296-3055 bp Feature: domain Description: PRK06079 Location: 2 2 96-3055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK06079 (enoyl- reductase FabI)

Seq: QKPV01000017.1 Lactobacillus reuteri strain PTA6_C7 NODE_17_length_37425_cov_121.649, whole genome shotgun sequence (37425 bp)
Overview 1 RT 1: 57-5876 bp Neighborhood of RT #1 [57, 5890] RVT-GII GIIM COG3666 DDE_Tnp_1 GalA Feature: gene Location: 57-1439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375-993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 75-993 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1275 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1275 bp Feature: gene Location: 1999-3699 bp Feature: domain Description: COG3666 Location: 2056-2479 bp Feature: domain Description: COG3 666 Location: 2056-2479 bp Feature: domain Description: DDE_Tnp_1 Location: 2794-3541 bp Feature: domain Description: DDE_Tnp_1 Location: 2794-3 541 bp Feature: gene Location: 3701-5890 bp Feature: domain Description: GalA Location: 3731-5876 bp Feature: domain Description: GalA Location: 3 73 1-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), GalA (COG3345)

Seq: QKPV01000056.1 Lactobacillus reuteri strain PTA6_C7 NODE_56_length_6675_cov_139.077, whole genome shotgun sequence (6675 bp)
Overview 1 RT 1: 3449-6347 bp Neighborhood of RT #1 [3449, 6415] TIR_2 COG2865 RVT-GII Feature: gene Location: 3449-4327 bp Feature: domain Description: TIR_2 Location: 3476-3821 bp Feature: domain Description: TIR_2 Location: 34 76-3821 bp Feature: gene Location: 4340-5866 bp Feature: domain Description: COG2865 Location: 4349-5822 bp Feature: domain Description: COG2865 Location: 4 34 9-5822 bp Feature: gene Location: 6119-6415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6125-6347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6125-634 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII