myRT

myRT report for GCA_009389155.1_ASM938915v1

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Seq: QKPZ01000011.1 Lactobacillus reuteri strain PTA5_C5 NODE_11_length_64996_cov_106.683, whole genome shotgun sequence (64996 bp)
Overview 1 RT 1: 58980-64959 bp Neighborhood of RT #1 [58980, 64959] PBP2_GlnP HisM PRK05431 RVT-GII GIIM Feature: gene Location: 58980-60443 bp Feature: domain Description: PBP2_GlnP Location: 59091-59760 bp Feature: domain Description: PBP2_GlnP Location: 59091 -59760 bp Feature: domain Description: HisM Location: 59814-60438 bp Feature: domain Description: HisM Location: 5981 4-60438 bp Feature: gene Location: 60713-62020 bp Feature: domain Description: PRK05431 Location: 60716-61982 bp Feature: domain Description: PRK05431 Location: 6071 6-61 982 bp Feature: gene Location: 63801-64178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63813-63972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381 3-63972 bp Feature: domain Description: GIIM Note: maturase Location: 64029-64176 bp Feature: domain Description: GIIM Note: maturase Location: 64029-641 76 bp Feature: gene Location: 64504-64959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_GlnP (cd13619), HisM (COG0765), PRK05431 (seryl-tRNA synthetase; Provisional), RVT-GII, GIIM (pfam08388)

Seq: QKPZ01000012.1 Lactobacillus reuteri strain PTA5_C5 NODE_12_length_60520_cov_83.3716, whole genome shotgun sequence (60520 bp)
Overview 1 RT 1: 21439-28971 bp Neighborhood of RT #1 [21439, 28985] PRK05437 DUF1440 RVT-GII GIIM COG3666 DDE_Tnp_1 GalA Feature: gene Location: 21439-22485 bp Feature: domain Description: PRK05437 Location: 21445-22477 bp Feature: domain Description: PRK05437 Location: 2 1445-2 2 477 bp Feature: gene Location: 22546-23034 bp Feature: domain Description: DUF1440 Location: 22612-23011 bp Feature: domain Description: DUF1440 Location: 2 2 612 -2 3011 bp Feature: gene Location: 23152-24534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23470-24088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3470-2 4088 bp Feature: domain Description: GIIM Note: maturase Location: 24142-24370 bp Feature: domain Description: GIIM Note: maturase Location: 2 4142 -2 4370 bp Feature: gene Location: 25094-26794 bp Feature: domain Description: COG3666 Location: 25151-25574 bp Feature: domain Description: COG3666 Location: 2 5151-2 5574 bp Feature: domain Description: DDE_Tnp_1 Location: 25889-26636 bp Feature: domain Description: DDE_Tnp_1 Location: 2 5889-2 6636 bp Feature: gene Location: 26796-28985 bp Feature: domain Description: GalA Location: 26826-28971 bp Feature: domain Description: GalA Location: 2 682 6-2 8971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05437 (isopentenyl pyrophosphate isomerase; Provisional), DUF1440 (pfam07274), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), GalA (COG3345)

Seq: QKPZ01000044.1 Lactobacillus reuteri strain PTA5_C5 NODE_44_length_11740_cov_116.011, whole genome shotgun sequence (11740 bp)
Overview 1 RT 1: 8514-11730 bp Neighborhood of RT #1 [8514, 11738] TIR_2 COG2865 RVT-GII group_II_RT_mat Feature: gene Location: 8514-9392 bp Feature: domain Description: TIR_2 Location: 8541-8886 bp Feature: domain Description: TIR_2 Location: 8541-8886 bp Feature: gene Location: 9405-10931 bp Feature: domain Description: COG2865 Location: 9414-10887 bp Feature: domain Description: COG2865 Location: 9414-10887 bp Feature: gene Location: 11184-11480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11190-11412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11190-11412 bp Feature: gene Location: 11487-11738 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11604-11730 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11604-1173 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: QKPZ01000007.1 Lactobacillus reuteri strain PTA5_C5 NODE_7_length_78015_cov_81.5053, whole genome shotgun sequence (78015 bp)
Overview 1 RT 1: 18121-21667 bp Neighborhood of RT #1 [18121, 21711] DUF308 DUF308 RVT-GII VanZ Feature: gene Location: 18121-18564 bp Feature: gene Location: 18588-19112 bp Feature: domain Description: DUF308 Location: 18633-18849 bp Feature: domain Description: DUF308 Location: 18633-1884 9 bp Feature: domain Description: DUF308 Location: 18981-19110 bp Feature: domain Description: DUF308 Location: 18981-19110 bp Feature: gene Location: 19713-20417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20031-20376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20031-20376 bp Feature: gene Location: 20921-21088 bp Feature: gene Location: 21100-21711 bp Feature: domain Description: VanZ Location: 21175-21667 bp Feature: domain Description: VanZ Location: 21175-21667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF308 (pfam03729), RVT-GII, VanZ (pfam04892)