myRT

myRT report for GCA_009393065.1_ASM939306v1

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Seq: RYAE01000116.1 Escherichia coli strain J034p NODE_116_length_2272_cov_52.897, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RYAE01000007.1 Escherichia coli strain J034p NODE_7_length_137227_cov_35.9242, whole genome shotgun sequence (137227 bp)
Overview 1 RT 1: 67955-75628 bp Neighborhood of RT #1 [67955, 76170] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP phage_tail_N ABC_SMC2_euk Collar Feature: gene Location: 67955-69541 bp Feature: domain Description: prfC Location: 67973-69539 bp Feature: domain Description: prfC Location: 67973-69539 bp Feature: gene Location: 69761-70021 bp Feature: domain Description: PRK10597 Location: 69764-70004 bp Feature: domain Description: PRK10597 Location: 69764-70004 bp Feature: gene Location: 70379-71983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70670-71261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70670-712 61 bp Feature: domain Description: TIR_2 Location: 71588-71921 bp Feature: domain Description: TIR_2 Location: 71588-7192 1 bp Feature: gene Location: 72428-73012 bp Feature: domain Description: Caudo_TAP Location: 72644-73001 bp Feature: domain Description: Caudo_TAP Location: 72 644-73001 bp Feature: gene Location: 73012-76170 bp Feature: domain Description: phage_tail_N Location: 73015-73414 bp Feature: domain Description: phage_tail_N Location: 73015-73414 bp Feature: domain Description: ABC_SMC2_euk Location: 73525-74509 bp Feature: domain Description: ABC_SMC2 _euk Location: 7352 5-74509 bp Feature: domain Description: Collar Location: 75490-75628 bp Feature: domain Description: Collar Location: 75490-7562 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), phage_tail_N (pfam08400), ABC_SMC2_euk (cd03273), Collar (pfam07484)

Seq: RYAE01000085.1 Escherichia coli strain J034p NODE_85_length_7693_cov_21.2291, whole genome shotgun sequence (7693 bp)
Overview 1 RT 1: 4703-7164 bp Neighborhood of RT #1 [4703, 7262] RVT-GII RVT-GII GIIM RAYT Feature: gene Location: 4703-4840 bp Feature: gene Location: 4930-5199 bp Feature: gene Location: 5224-5868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5512-5863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5512-5863 bp Feature: gene Location: 5875-6570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5878-6130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5878-613 0 bp Feature: domain Description: GIIM Note: maturase Location: 6178-6409 bp Feature: domain Description: GIIM Note: maturase Location: 6178-6409 bp Feature: gene Location: 6645-7262 bp Feature: domain Description: RAYT Location: 6801-7164 bp Feature: domain Description: RAYT Location: 6801-7164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943)