myRT

myRT report for GCA_009393365.1_ASM939336v1

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Seq: RYAV01000047.1 Escherichia coli strain F060p NODE_47_length_20638_cov_32.6948, whole genome shotgun sequence (20638 bp)
Overview 1 RT 1: 788-4993 bp Neighborhood of RT #1 [788, 5019] COG3680 RVT-Retrons PBP2_CrgA_like_5 Feature: gene Location: 788-1561 bp Feature: domain Description: COG3680 Location: 791-1559 bp Feature: domain Description: COG3680 Location: 791 -1 559 bp Feature: gene Location: 2273-2434 bp Feature: gene Location: 2659-4107 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2662-3103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2662-31 03 bp Feature: gene Location: 4219-4347 bp Feature: gene Location: 4609-5019 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4681-4993 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 4681 -4993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PBP2_CrgA_like_5 (cd08474), COG3680 (Uncharacterized protein )

Seq: RYAV01000054.1 Escherichia coli strain F060p NODE_54_length_13278_cov_29.2485, whole genome shotgun sequence (13278 bp)
Overview 1 RT 1: 163-2955 bp Neighborhood of RT #1 [163, 3008] RVT-GII GIIM PRK10002 Feature: gene Location: 163-1509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 59-991 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1066-12 64 bp Feature: gene Location: 1596-1781 bp Feature: gene Location: 2028-3008 bp Feature: domain Description: PRK10002 Location: 2031-2955 bp Feature: domain Description: PRK10002 Location: 2 031-2 955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10002 (porin OmpF)

Seq: RYAV01000057.1 Escherichia coli strain F060p NODE_57_length_11764_cov_34.049, whole genome shotgun sequence (11764 bp)
Overview 1 RT 1: 4858-7844 bp Neighborhood of RT #1 [4858, 7844] RVT-GII GIIM RVT-GII Feature: gene Location: 4858-5043 bp Feature: gene Location: 5216-5386 bp Feature: gene Location: 5549-6202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5552-5960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5552-5960 bp Feature: domain Description: GIIM Note: maturase Location: 6008-6200 bp Feature: domain Description: GIIM Note: maturase Location: 6008-6200 bp Feature: gene Location: 6175-6609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6367-6583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 67-6583 bp Feature: gene Location: 6778-6975 bp Feature: gene Location: 7518-7844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)