myRT

myRT report for GCA_009393395.1_ASM939339v1

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Seq: RYAW01000043.1 Escherichia coli strain F056p NODE_43_length_21082_cov_33.2208, whole genome shotgun sequence (21082 bp)
Overview 1 RT 1: 15620-18740 bp Neighborhood of RT #1 [15620, 18740] PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 15620-16030 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 15692-16004 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 1 5692-1 6004 bp Feature: gene Location: 16292-16420 bp Feature: gene Location: 16532-17980 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16535-16976 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6535-1 6976 bp Feature: gene Location: 18036-18239 bp Feature: gene Location: 18567-18740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: RYAW01000053.1 Escherichia coli strain F056p NODE_53_length_11764_cov_34.9715, whole genome shotgun sequence (11764 bp)
Overview 1 RT 1: 4858-7844 bp Neighborhood of RT #1 [4858, 7844] RVT-GII GIIM RVT-GII Feature: gene Location: 4858-5043 bp Feature: gene Location: 5216-5386 bp Feature: gene Location: 5549-6202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5552-5960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5552 -5960 bp Feature: domain Description: GIIM Note: maturase Location: 6008-6200 bp Feature: domain Description: GIIM Note: maturase Location: 6008-62 00 bp Feature: gene Location: 6175-6609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6367-6583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6367-6583 bp Feature: gene Location: 6778-6975 bp Feature: gene Location: 7518-7844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RYAW01000095.1 Escherichia coli strain F056p NODE_95_length_1827_cov_30.3288, whole genome shotgun sequence (1827 bp)
Overview 1 RT 1: 163-1827 bp Neighborhood of RT #1 [163, 1826] RVT-GII GIIM PHA02517 Feature: gene Location: 163-1509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: gene Location: 1674-1826 bp Feature: domain Description: PHA02517 Location: 1677-1827 bp Feature: domain Description: PHA02517 Location: 1677-1827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)