myRT

myRT report for GCA_009393555.1_ASM939355v1

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Seq: RYBG01000102.1 Escherichia coli strain B013p2 NODE_102_length_2669_cov_69.5822, whole genome shotgun sequence (2669 bp)
Overview 1 RT 1: 270-2420 bp Neighborhood of RT #1 [270, 2515] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 -1 71 2 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 1 826-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: RYBG01000110.1 Escherichia coli strain B013p2 NODE_110_length_2272_cov_140.275, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RYBG01000019.1 Escherichia coli strain B013p2 NODE_19_length_77359_cov_28.7467, whole genome shotgun sequence (77359 bp)
Overview 1 RT 1: 925-4395 bp Neighborhood of RT #1 [925, 4502] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 925-1227 bp Feature: domain Description: Arm-DNA-bind_3 Location: 934-1186 bp Feature: domain Description: Arm-DNA-bind_3 Location: 93 4-1186 bp Feature: gene Location: 1411-1656 bp Feature: gene Location: 1682-2614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1784-2378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1784-23 78 bp Feature: gene Location: 2616-3602 bp Feature: gene Location: 4230-4502 bp Feature: domain Description: PRK09678 Location: 4239-4395 bp Feature: domain Description: PRK09678 Location: 423 9-43 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: RYBG01000007.1 Escherichia coli strain B013p2 NODE_7_length_181408_cov_28.3919, whole genome shotgun sequence (181408 bp)
Overview 1 RT 1: 23962-28253 bp Neighborhood of RT #1 [23962, 28253] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23962-25224 bp Feature: domain Description: YesM Location: 24475-25216 bp Feature: domain Description: YesM Location: 24 4 75-25216 bp Feature: gene Location: 25254-25424 bp Feature: gene Location: 25774-26295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25780-26062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25780-26062 bp Feature: domain Description: GIIM Note: maturase Location: 26110-26290 bp Feature: domain Description: GIIM Note: maturase Location: 26110-26290 bp Feature: gene Location: 26323-26862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26653-26731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26653-26731 bp Feature: gene Location: 26893-27090 bp Feature: gene Location: 27348-28253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)