myRT

myRT report for GCA_009394055.1_ASM939405v1

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Seq: RYCF01000296.1 Escherichia coli strain A016f NODE_296_length_2272_cov_674.111, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RYCF01000030.1 Escherichia coli strain A016f NODE_30_length_42723_cov_123.216, whole genome shotgun sequence (42723 bp)
Overview 1 RT 1: 15140-19431 bp Neighborhood of RT #1 [15140, 19431] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15140-16402 bp Feature: domain Description: YesM Location: 15653-16394 bp Feature: domain Description: YesM Location: 15653-16394 bp Feature: gene Location: 16432-16602 bp Feature: gene Location: 16952-17473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16958-17240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16958-172 40 bp Feature: domain Description: GIIM Note: maturase Location: 17288-17468 bp Feature: domain Description: GIIM Note: maturase Location: 172 88-17468 bp Feature: gene Location: 17501-18040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17831-17909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17831-17909 bp Feature: gene Location: 18071-18268 bp Feature: gene Location: 18526-19431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: RYCF01000047.1 Escherichia coli strain A016f NODE_47_length_32498_cov_126.967, whole genome shotgun sequence (32498 bp)
Overview 1 RT 1: 1148-10886 bp Neighborhood of RT #1 [1148, 10912] BRR2 BRR2 RVT-UG8 RVT-UG3 COG4688 COG4688 Feature: gene Location: 1148-4303 bp Feature: domain Description: BRR2 Location: 1871-2447 bp Feature: domain Description: BRR2 Location: 1871-2447 bp Feature: domain Description: BRR2 Location: 2882-3128 bp Feature: domain Description: BRR2 Location: 2882-3 128 bp Feature: gene Location: 4441-4623 bp Feature: gene Location: 5031-7073 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5643-6090 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5643 -6090 bp Feature: gene Location: 7066-8415 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 7522-7999 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 7522-7999 bp Feature: gene Location: 8467-8886 bp Feature: gene Location: 8879-10912 bp Feature: domain Description: COG4688 Location: 8882-9788 bp Feature: domain Description: COG4688 Location: 8882-9788 bp Feature: domain Description: COG4688 Location: 10163-10886 bp Feature: domain Description: COG4688 Location: 10163 -10886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BRR2 (COG1204), RVT-UG8, RVT-UG3, COG4688 (Uncharacterized protein )

Seq: RYCF01000097.1 Escherichia coli strain A016f NODE_97_length_13806_cov_136.105, whole genome shotgun sequence (13806 bp)
Overview 1 RT 1: 8840-12376 bp Neighborhood of RT #1 [8840, 12417] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 8840-9112 bp Feature: domain Description: PRK09678 Location: 8849-9005 bp Feature: domain Description: PRK09678 Location: 884 9-9005 bp Feature: gene Location: 9740-10726 bp Feature: gene Location: 10728-11660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10830-11424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10830-114 24 bp Feature: gene Location: 11686-11931 bp Feature: gene Location: 12115-12417 bp Feature: domain Description: Arm-DNA-bind_3 Location: 12124-12376 bp Feature: domain Description: Arm-DNA-bind_3 Location: 12124 -12376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)