myRT

myRT report for GCA_009394115.1_ASM939411v1

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Seq: RYCH01000107.1 Escherichia coli strain A016d NODE_107_length_2272_cov_708.042, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RYCH01000017.1 Escherichia coli strain A016d NODE_17_length_77080_cov_129.089, whole genome shotgun sequence (77080 bp)
Overview 1 RT 1: 73077-76163 bp Neighborhood of RT #1 [73077, 76204] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 73077-73226 bp Feature: gene Location: 73527-74513 bp Feature: gene Location: 74515-75447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74617-75211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74617-752 11 bp Feature: gene Location: 75473-75718 bp Feature: gene Location: 75902-76204 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75911-76163 bp Feature: domain Description: Arm-DNA-bind_3 Location: 75911-76163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: RYCH01000034.1 Escherichia coli strain A016d NODE_34_length_43104_cov_135.398, whole genome shotgun sequence (43104 bp)
Overview 1 RT 1: 15521-19812 bp Neighborhood of RT #1 [15521, 19812] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15521-16783 bp Feature: domain Description: YesM Location: 16034-16775 bp Feature: domain Description: YesM Location: 1603 4-16775 bp Feature: gene Location: 16813-16983 bp Feature: gene Location: 17333-17854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17339-17621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 3 9-17621 bp Feature: domain Description: GIIM Note: maturase Location: 17669-17849 bp Feature: domain Description: GIIM Note: maturase Location: 17669-17849 bp Feature: gene Location: 17882-18421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18212-18290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18212-18290 bp Feature: gene Location: 18452-18649 bp Feature: gene Location: 18907-19812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: RYCH01000007.1 Escherichia coli strain A016d NODE_7_length_181459_cov_133.585, whole genome shotgun sequence (181459 bp)
Overview 1 RT 1: 88482-98220 bp Neighborhood of RT #1 [88482, 98246] BRR2 BRR2 RVT-UG8 RVT-UG3 COG4688 COG4688 Feature: gene Location: 88482-91637 bp Feature: domain Description: BRR2 Location: 89205-89781 bp Feature: domain Description: BRR2 Location: 89205-89781 bp Feature: domain Description: BRR2 Location: 90216-90462 bp Feature: domain Description: BRR2 Location: 90216-904 62 bp Feature: gene Location: 91829-91957 bp Feature: gene Location: 92365-94407 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 92977-93424 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 92977-934 24 bp Feature: gene Location: 94400-95749 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 94856-95333 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 94 856-95333 bp Feature: gene Location: 95801-96220 bp Feature: gene Location: 96213-98246 bp Feature: domain Description: COG4688 Location: 96216-97122 bp Feature: domain Description: COG4 688 Location: 96216-97122 bp Feature: domain Description: COG4688 Location: 97497-98220 bp Feature: domain Description: COG4 688 Location: 974 97-98220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BRR2 (COG1204), RVT-UG8, RVT-UG3, COG4688 (Uncharacterized protein )