myRT

myRT report for GCA_009394305.1_ASM939430v1

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Seq: RYCT01000116.1 Escherichia coli strain F012ca NODE_116_length_3725_cov_350.154, whole genome shotgun sequence (3725 bp)
Overview 1 RT 1: 41-3723 bp Neighborhood of RT #1 [41, 3722] InsA PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 41-316 bp Feature: domain Description: InsA Location: 44-311 bp Feature: domain Description: InsA Location: 44-31 1 bp Feature: gene Location: 367-519 bp Feature: domain Description: PHA02517 Location: 370-517 bp Feature: domain Description: PHA0251 7 Location: 370-51 7 bp Feature: gene Location: 642-2165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915-1647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 5-1 647 bp Feature: domain Description: GIIM Note: maturase Location: 1722-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1 722-1 920 bp Feature: gene Location: 2757-3344 bp Feature: domain Description: PHA02517 Location: 2943-3279 bp Feature: domain Description: PHA0251 7 Location: 2943-3279 bp Feature: gene Location: 3150-3722 bp Feature: domain Description: PHA02517 Location: 3336-3723 bp Feature: domain Description: PHA0251 7 Location: 3336-3723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: RYCT01000001.1 Escherichia coli strain F012ca NODE_1_length_350624_cov_135.07, whole genome shotgun sequence (350624 bp)
Overview 1 RT 1: 180704-187266 bp Neighborhood of RT #1 [180704, 187274] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 180704-180979 bp Feature: domain Description: DUF5405 Location: 180722-180962 bp Feature: domain Description: DUF5405 Location: 18072 2 -180962 bp Feature: gene Location: 180969-183239 bp Feature: domain Description: Phage_GPA Location: 181368-182355 bp Feature: domain Description: Phage_GPA Location: 181368-182 355 bp Feature: gene Location: 183566-184555 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183683-184244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183683-1842 44 bp Feature: gene Location: 184557-185909 bp Feature: domain Description: ABC_ATPase Location: 184617-185340 bp Feature: domain Description: ABC_ATPase Location: 184617-185340 bp Feature: gene Location: 186240-187274 bp Feature: domain Description: Q Location: 186243-187266 bp Feature: domain Description: Q Location: 1862 43-1872 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)

Seq: RYCT01000025.1 Escherichia coli strain F012ca NODE_25_length_65021_cov_167.36, whole genome shotgun sequence (65021 bp)
Overview 1 RT 1: 1425-7417 bp Neighborhood of RT #1 [1425, 7452] Psu RVT-UG7 PRK09692 proA Feature: gene Location: 1425-1991 bp Feature: domain Description: Psu Location: 1443-1986 bp Feature: domain Description: Psu Location: 1443 -1986 bp Feature: gene Location: 2303-3043 bp Feature: gene Location: 3040-4668 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3448-3877 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3 448-3 877 bp Feature: gene Location: 4661-5845 bp Feature: domain Description: PRK09692 Location: 4667-5822 bp Feature: domain Description: PRK09692 Location: 4667-5822 bp Feature: gene Location: 6199-7452 bp Feature: domain Description: proA Location: 6226-7417 bp Feature: domain Description: proA Location: 6226-7417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional), proA (TIGR00407)

Seq: RYCT01000088.1 Escherichia coli strain F012ca NODE_88_length_7938_cov_289.34, whole genome shotgun sequence (7938 bp)
Overview 1 RT 1: 4949-7411 bp Neighborhood of RT #1 [4949, 7509] RVT-GII GIIM RAYT Feature: gene Location: 4949-5086 bp Feature: gene Location: 5176-5445 bp Feature: gene Location: 5470-6816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5758-6376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5758-6376 bp Feature: domain Description: GIIM Note: maturase Location: 6424-6655 bp Feature: domain Description: GIIM Note: maturase Location: 64 24 -6655 bp Feature: gene Location: 6970-7509 bp Feature: domain Description: RAYT Location: 7048-7411 bp Feature: domain Description: RAYT Location: 704 8-74 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943)