myRT

myRT report for GCA_009428945.1_ASM942894v1

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Seq: WHZZ01000012.1 Photorhabdus khanii strain HGB 1456 NODE_12_length_118625_cov_59.866766, whole genome shotgun sequence (118625 bp)
Overview 1 RT 1: 51413-55212 bp 2 RT 2: 100404-105857 bp Neighborhood of RT #1 [51413, 55331] DUF932 RVT-GII GIIM HsdM Neighborhood of RT #2 [100404, 105913] ETX_MTX2 RVT-GII RVT_N DUF4158 DDE_Tnp_Tn3 Feature: gene Location: 51413-52231 bp Feature: domain Description: DUF932 Location: 51524-52196 bp Feature: domain Description: DUF932 Location: 51 524-521 96 bp Feature: gene Location: 52291-52497 bp Feature: gene Location: 52713-54101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53043-53661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53043-53661 bp Feature: domain Description: GIIM Note: maturase Location: 53712-53922 bp Feature: domain Description: GIIM Note: maturase Location: 5371 2-53922 bp Feature: gene Location: 54217-54426 bp Feature: gene Location: 54594-55331 bp Feature: domain Description: HsdM Location: 54873-55212 bp Feature: domain Description: HsdM Location: 54873-5521 2 bp Feature: gene Location: 100404-100715 bp Feature: gene Location: 100983-101852 bp Feature: domain Description: ETX_MTX2 Location: 101196-101472 bp Feature: domain Description: ETX_MTX2 Location: 1 01 1 96-1 01 472 bp Feature: gene Location: 101889-102518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101907-102372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 907-1 02372 bp Feature: gene Location: 102591-102884 bp Feature: domain Description: RVT_N Location: 102687-102882 bp Feature: domain Description: RVT_N Location: 1 02687-1 02882 bp Feature: gene Location: 102896-105913 bp Feature: domain Description: DUF4158 Location: 102944-103406 bp Feature: domain Description: DUF41 58 Location: 1 02944-1 03406 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 104699-105857 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 04699-1 05857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, GIIM (pfam08388), HsdM (COG0286), ETX_MTX2 (pfam03318), RVT_N (pfam13655), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526)

Seq: WHZZ01000016.1 Photorhabdus khanii strain HGB 1456 NODE_16_length_92275_cov_46.388180, whole genome shotgun sequence (92275 bp)
Overview 1 RT 1: 1740-5313 bp Neighborhood of RT #1 [1740, 5420] AraC_binding AraC DDE_Tnp_Tn3 RVT-GII COG5340 AbiEii Feature: gene Location: 1740-2507 bp Feature: domain Description: AraC_binding Location: 1797-2097 bp Feature: domain Description: AraC_binding Location: 1797-2 097 bp Feature: domain Description: AraC Location: 2232-2499 bp Feature: domain Description: AraC Location: 2 2 32 -2 499 bp Feature: gene Location: 2954-3181 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2960-3119 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2 960-3119 bp Feature: gene Location: 3368-3694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3371-3671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3371-3671 bp Feature: gene Location: 3974-4510 bp Feature: domain Description: COG5340 Location: 3986-4319 bp Feature: domain Description: COG5340 Location: 3986-4319 bp Feature: gene Location: 4500-5420 bp Feature: domain Description: AbiEii Location: 4611-5313 bp Feature: domain Description: AbiEii Location: 4611-5313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding (pfam02311), AraC (COG2207), DDE_Tnp_Tn3 (pfam01526), RVT-GII, COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843)

Seq: WHZZ01000001.1 Photorhabdus khanii strain HGB 1456 NODE_1_length_1453311_cov_38.469422, whole genome shotgun sequence (1453311 bp)
Overview 1 RT 1: 457326-460127 bp 2 RT 2: 864237-867592 bp Neighborhood of RT #1 [457326, 460417] RVT-GII PinE Collar Neighborhood of RT #2 [864237, 867594] RVT-GII GIIM SUL1 ompX Feature: gene Location: 457326-457820 bp Feature: gene Location: 457891-458472 bp Feature: gene Location: 458352-458825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458688-458805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 458688-458805 bp Feature: gene Location: 458944-459534 bp Feature: domain Description: PinE Location: 458947-459517 bp Feature: domain Description: PinE Location: 458947-459517 bp Feature: gene Location: 459662-460417 bp Feature: domain Description: Collar Location: 459986-460127 bp Feature: domain Description: Collar Location: 459986-460127 bp Feature: gene Location: 864237-864401 bp Feature: gene Location: 864409-864744 bp Feature: gene Location: 864741-866003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864945-865602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864945-865602 bp Feature: domain Description: GIIM Note: maturase Location: 865683-865887 bp Feature: domain Description: GIIM Note: maturase Location: 865683 -865887 bp Feature: gene Location: 866053-866898 bp Feature: domain Description: SUL1 Location: 866068-866815 bp Feature: domain Description: SUL1 Location: 866068-866815 bp Feature: gene Location: 867052-867594 bp Feature: domain Description: ompX Location: 867055-867592 bp Feature: domain Description: ompX Location: 867055-867592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), Collar (pfam07484), GIIM (pfam08388), SUL1 (COG0659), ompX (PRK09408)

Seq: WHZZ01000020.1 Photorhabdus khanii strain HGB 1456 NODE_20_length_29244_cov_40.391833, whole genome shotgun sequence (29244 bp)
Overview 1 RT 1: 98-2412 bp Neighborhood of RT #1 [98, 2412] RVT_N RVT-GII GIIM Feature: gene Location: 98-1447 bp Feature: domain Description: RVT_N Location: 308-551 bp Feature: domain Description: RVT_N Location: 308-551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-1217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-1217 bp Feature: domain Description: GIIM Note: maturase Location: 1268-1421 bp Feature: domain Description: GIIM Note: maturase Location: 1268-14 21 bp Feature: gene Location: 1552-1692 bp Feature: gene Location: 1885-2412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WHZZ01000002.1 Photorhabdus khanii strain HGB 1456 NODE_2_length_926513_cov_46.780409, whole genome shotgun sequence (926513 bp)
Overview 1 RT 1: 602447-605917 bp 2 RT 2: 680156-684176 bp 3 RT 3: 814325-820631 bp 4 RT 4: 851107-854984 bp Neighborhood of RT #1 [602447, 605917] MFS_NepI_like RVT-GII GIIM RVT-GII Neighborhood of RT #2 [680156, 684367] FIDO RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #3 [814325, 820642] RAYT RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII DDE_Tnp_1_3 Neighborhood of RT #4 [851107, 854986] DDE_Tnp_1_3 RVT-GII GIIM livF Feature: gene Location: 602447-603754 bp Feature: domain Description: MFS_NepI_like Location: 602618-603731 bp Feature: domain Description: MFS_NepI_like Location: 602618-603731 bp Feature: gene Location: 603787-603984 bp Feature: gene Location: 604129-604701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604132-604339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604132-604339 bp Feature: domain Description: GIIM Note: maturase Location: 604456-604624 bp Feature: domain Description: GIIM Note: maturase Location: 60445 6-604624 bp Feature: gene Location: 604698-605135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604701-605067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604701-605 067 bp Feature: gene Location: 605268-605558 bp Feature: gene Location: 605582-605917 bp Feature: gene Location: 680156-680314 bp Feature: gene Location: 680491-680703 bp Feature: domain Description: FIDO Location: 680494-680701 bp Feature: domain Description: FIDO Location: 680494-680701 bp Feature: gene Location: 681025-682068 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 681238-681835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 681238-681835 bp Feature: gene Location: 682065-683717 bp Feature: domain Description: COG3950 Location: 682263-683682 bp Feature: domain Description: COG395 0 Location: 682263-683682 bp Feature: gene Location: 683720-684367 bp Feature: domain Description: TIGR02646 Location: 683789-684176 bp Feature: domain Description: TIGR02646 Location: 683789-684176 bp Feature: gene Location: 814325-814501 bp Feature: domain Description: RAYT Location: 814331-814463 bp Feature: domain Description: RAYT Location: 814331-814463 bp Feature: gene Location: 814800-815033 bp Feature: gene Location: 815055-815588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815058-815331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815 05 8-815 331 bp Feature: domain Description: GIIM Note: maturase Location: 815418-815562 bp Feature: domain Description: GIIM Note: maturase Location: 815 418-815 5 62 bp Feature: gene Location: 815756-816979 bp Feature: domain Description: Phage_int_SAM_4 Location: 816101-816326 bp Feature: domain Description: Phage_int_SAM_4 Location: 816101-816326 bp Feature: domain Description: INT_RitA_C_like Location: 816422-816962 bp Feature: domain Description: INT_RitA_C_like Location: 816422-816962 bp Feature: gene Location: 816979-817953 bp Feature: domain Description: INT_RitB_C_like Location: 817306-817894 bp Feature: domain Description: INT_RitB_C_like Location: 817306-817894 bp Feature: gene Location: 817940-818950 bp Feature: domain Description: Phage_int_SAM_1 Location: 817982-818225 bp Feature: domain Description: Phage_int_SAM_1 Location: 817982-818225 bp Feature: domain Description: INT_RitC_C_like Location: 818318-818870 bp Feature: domain Description: INT_RitC_C_like Location: 818318-818870 bp Feature: gene Location: 819079-819594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819226-819589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819226-8195 89 bp Feature: gene Location: 819804-820052 bp Feature: gene Location: 820247-820642 bp Feature: domain Description: DDE_Tnp_1_3 Location: 820283-820631 bp Feature: domain Description: DDE_Tnp_1_3 Location: 820283-820631 bp Feature: gene Location: 851107-851532 bp Feature: gene Location: 851786-852049 bp Feature: domain Description: DDE_Tnp_1_3 Location: 851792-851939 bp Feature: domain Description: DDE_Tnp_1_3 Location: 85 1792-85 1939 bp Feature: gene Location: 852147-853409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 852351-853008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85 235 1-85 3008 bp Feature: domain Description: GIIM Note: maturase Location: 853089-853293 bp Feature: domain Description: GIIM Note: maturase Location: 85 3089-85 3293 bp Feature: gene Location: 853406-853741 bp Feature: gene Location: 854282-854986 bp Feature: domain Description: livF Location: 854288-854984 bp Feature: domain Description: livF Location: 85 4288-85 4984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_NepI_like (cd17324), RVT-GII, GIIM (pfam08388), FIDO (COG2184), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), RAYT (COG1943), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188)
INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), DDE_Tnp_1_3 (pfam13612), livF (PRK11614)

Seq: WHZZ01000005.1 Photorhabdus khanii strain HGB 1456 NODE_5_length_338534_cov_50.600395, whole genome shotgun sequence (338534 bp)
Overview 1 RT 1: 78000-83689 bp Neighborhood of RT #1 [78000, 83709] TIGR02646 COG3950 RVT-Retrons CypX AlkA Feature: gene Location: 78000-78635 bp Feature: domain Description: TIGR02646 Location: 78093-78408 bp Feature: domain Description: TIGR026 46 Location: 78093-78408 bp Feature: gene Location: 78638-80245 bp Feature: domain Description: COG3950 Location: 78818-80093 bp Feature: domain Description: COG3950 Location: 78818-80093 bp Feature: gene Location: 80248-81234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80401-80998 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80401-80998 bp Feature: gene Location: 81517-82761 bp Feature: domain Description: CypX Location: 81553-82726 bp Feature: domain Description: CypX Location: 81553-82726 bp Feature: gene Location: 82807-83709 bp Feature: domain Description: AlkA Location: 83128-83689 bp Feature: domain Description: AlkA Location: 83128-836 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, CypX (COG2124), AlkA (COG0122)

Seq: WHZZ01000008.1 Photorhabdus khanii strain HGB 1456 NODE_8_length_150178_cov_42.626534, whole genome shotgun sequence (150178 bp)
Overview 1 RT 1: 90477-97167 bp Neighborhood of RT #1 [90477, 97184] RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII group_II_RT_mat COG3293 COG3293 Feature: gene Location: 90477-90707 bp Feature: gene Location: 90789-91007 bp Feature: gene Location: 91045-91692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91054-91270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91054-9127 0 bp Feature: domain Description: GIIM Note: maturase Location: 91354-91567 bp Feature: domain Description: GIIM Note: maturase Location: 91354-91567 bp Feature: gene Location: 91848-92858 bp Feature: domain Description: Phage_int_SAM_1 Location: 91890-92133 bp Feature: domain Description: Phage_int_SAM_1 Location: 91890-92133 bp Feature: domain Description: INT_RitC_C_like Location: 92226-92778 bp Feature: domain Description: INT_RitC_C_like Location: 92226-927 7 8 bp Feature: gene Location: 92845-93819 bp Feature: domain Description: INT_RitB_C_like Location: 93172-93760 bp Feature: domain Description: INT_RitB_C_like Location: 9317 2-937 60 bp Feature: gene Location: 93819-94880 bp Feature: domain Description: Phage_int_SAM_4 Location: 94002-94227 bp Feature: domain Description: Phage_int_SAM_4 Location: 94002-94227 bp Feature: domain Description: INT_RitA_C_like Location: 94323-94863 bp Feature: domain Description: INT_RitA_C_like Location: 94323-94863 bp Feature: gene Location: 95190-95672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95259-95640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95259-95640 bp Feature: gene Location: 95795-96298 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 95804-96197 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 95804-96197 bp Feature: gene Location: 96378-97184 bp Feature: domain Description: COG3293 Location: 96522-96744 bp Feature: domain Description: COG3293 Location: 96522-967 44 bp Feature: domain Description: COG3293 Location: 96789-97167 bp Feature: domain Description: COG3293 Location: 967 89-97 167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), group_II_RT_mat (TIGR04416), COG3293 (Transposase )