myRT

myRT report for GCA_009466385.1_ASM946638v1

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Seq: WIAQ01000014.1 Bacillus sp. SYSU G01002 scaffold14, whole genome shotgun sequence (53566 bp)
Overview 1 RT 1: 41928-46632 bp 2 RT 2: 49562-53534 bp Neighborhood of RT #1 [41928, 46640] SHOCT DsbD_2 RVT-GII GIIM Sortilin-Vps10 Sortilin-Vps10 TVP38 Neighborhood of RT #2 [49562, 53563] Cupredoxin_like_2 RlmI_M_like RVT-GII GIIM RVT-GII Feature: gene Location: 41928-42128 bp Feature: domain Description: SHOCT Location: 42051-42126 bp Feature: domain Description: SHOCT Location: 42051 -421 26 bp Feature: gene Location: 42153-42872 bp Feature: domain Description: DsbD_2 Location: 42231-42849 bp Feature: domain Description: DsbD_2 Location: 42231 -42849 bp Feature: gene Location: 43106-44407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43412-44045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4341 2-44045 bp Feature: domain Description: GIIM Note: maturase Location: 44126-44354 bp Feature: domain Description: GIIM Note: maturase Location: 441 26-44354 bp Feature: gene Location: 44968-46062 bp Feature: domain Description: Sortilin-Vps10 Location: 45469-45856 bp Feature: domain Description: Sortilin-Vps1 0 Location: 45469-45856 bp Feature: domain Description: Sortilin-Vps10 Location: 45925-46042 bp Feature: domain Description: Sortilin-Vps1 0 Location: 45925-46042 bp Feature: gene Location: 46071-46640 bp Feature: domain Description: TVP38 Location: 46077-46632 bp Feature: domain Description: TVP38 Location: 46077-46632 bp Feature: gene Location: 49562-50506 bp Feature: domain Description: Cupredoxin_like_2 Location: 50192-50501 bp Feature: domain Description: Cupredoxin_like_2 Location: 501 92-50501 bp Feature: gene Location: 51123-51437 bp Feature: domain Description: RlmI_M_like Location: 51126-51252 bp Feature: domain Description: RlmI_M_like Location: 51 1 26-51 252 bp Feature: gene Location: 52140-52874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52149-52431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 49-52431 bp Feature: domain Description: GIIM Note: maturase Location: 52479-52692 bp Feature: domain Description: GIIM Note: maturase Location: 52479-52692 bp Feature: gene Location: 52874-53563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53030-53534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53030-53534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SHOCT (pfam09851), DsbD_2 (pfam13386), RVT-GII, GIIM (pfam08388), Sortilin-Vps10 (pfam15902), TVP38 (COG0398), Cupredoxin_like_2 (cd04211), RlmI_M_like (cd11572)

Seq: WIAQ01000027.1 Bacillus sp. SYSU G01002 scaffold27, whole genome shotgun sequence (54840 bp)
Overview 1 RT 1: 52371-54659 bp Neighborhood of RT #1 [52371, 54838] DUF5327 KOG2994 RVT-GII GIIM Feature: gene Location: 52371-52682 bp Feature: domain Description: DUF5327 Location: 52401-52680 bp Feature: domain Description: DUF532 7 Location: 52 401-52 680 bp Feature: gene Location: 53098-53787 bp Feature: domain Description: KOG2994 Location: 53110-53764 bp Feature: domain Description: KOG2 994 Location: 53110-53764 bp Feature: gene Location: 54143-54838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54146-54395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54146-54395 bp Feature: domain Description: GIIM Note: maturase Location: 54443-54659 bp Feature: domain Description: GIIM Note: maturase Location: 54443-54659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5327 (pfam17261), KOG2994 (KOG2994, Uracil DNA glycosylase ), RVT-GII, GIIM (pfam08388)

Seq: WIAQ01000033.1 Bacillus sp. SYSU G01002 scaffold33, whole genome shotgun sequence (30065 bp)
Overview 1 RT 1: 1-2521 bp Neighborhood of RT #1 [1, 2535] RVT-GII GIIM COG5584 FrvX Feature: gene Location: 1-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-451 bp Feature: domain Description: GIIM Note: maturase Location: 499-712 bp Feature: domain Description: GIIM Note: maturase Location: 499-712 bp Feature: gene Location: 972-1283 bp Feature: domain Description: COG5584 Location: 975-1275 bp Feature: domain Description: COG5584 Location: 975-1275 bp Feature: gene Location: 1462-2535 bp Feature: domain Description: FrvX Location: 1474-2521 bp Feature: domain Description: FrvX Location: 1474-2521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FrvX (COG1363), RVT-GII, GIIM (pfam08388), COG5584 (Predicted small secreted protein )

Seq: WIAQ01000036.1 Bacillus sp. SYSU G01002 scaffold36, whole genome shotgun sequence (29557 bp)
Overview 1 RT 1: 22691-26213 bp Neighborhood of RT #1 [22691, 26218] rve_2 PRK13289 RVT-GII GIIM helD Feature: gene Location: 22691-22933 bp Feature: domain Description: rve_2 Location: 22697-22808 bp Feature: domain Description: rve_2 Location: 22697-22808 bp Feature: gene Location: 22964-24175 bp Feature: domain Description: PRK13289 Location: 22967-24170 bp Feature: domain Description: PRK13289 Location: 22967-24 170 bp Feature: gene Location: 24419-25438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24425-24995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 4 25-24 995 bp Feature: domain Description: GIIM Note: maturase Location: 25043-25256 bp Feature: domain Description: GIIM Note: maturase Location: 2504 3-25256 bp Feature: gene Location: 25571-25819 bp Feature: gene Location: 25910-26218 bp Feature: domain Description: helD Location: 25946-26213 bp Feature: domain Description: helD Location: 2594 6-26213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), PRK13289 (NO-inducible flavohemoprotein), RVT-GII, GIIM (pfam08388), helD (PRK11054)

Seq: WIAQ01000009.1 Bacillus sp. SYSU G01002 scaffold9, whole genome shotgun sequence (122020 bp)
Overview 1 RT 1: 76012-81212 bp Neighborhood of RT #1 [76012, 81244] DeoR PRK07729 RVT-GII GIIM spore_pdaA Feature: gene Location: 76012-77088 bp Feature: domain Description: DeoR Location: 76096-77083 bp Feature: domain Description: DeoR Location: 76096-77083 bp Feature: gene Location: 77150-78157 bp Feature: domain Description: PRK07729 Location: 77153-78149 bp Feature: domain Description: PRK07729 Location: 7715 3-78149 bp Feature: gene Location: 79205-79789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79403-79787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79403-79787 bp Feature: gene Location: 79834-80175 bp Feature: domain Description: GIIM Note: maturase Location: 79837-79999 bp Feature: domain Description: GIIM Note: maturase Location: 79837-79999 bp Feature: gene Location: 80456-81244 bp Feature: domain Description: spore_pdaA Location: 80546-81212 bp Feature: domain Description: spore_pdaA Location: 805 46-81212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DeoR (COG2390), PRK07729 (glyceraldehyde-3-phosphate dehydrogenase; Validated), RVT-GII, GIIM (pfam08388), spore_pdaA (TIGR02884)