myRT

myRT report for GCA_009493935.1_ASM949393v1

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Seq: VZCX01000114.1 Prevotella copri strain iAQ1183 NODE_11_length_87908_cov_20.6351_ID_21, whole genome shotgun sequence (87909 bp)
Overview 1 RT 1: 42865-49232 bp Neighborhood of RT #1 [42865, 49246] Lipocalin_4 DUF1016_N YhcG_C RVT-GII GIIM proA PRK04523 Feature: gene Location: 42865-43335 bp Feature: domain Description: Lipocalin_4 Location: 42988-43273 bp Feature: domain Description: Lipocalin_4 Location: 42988-43273 bp Feature: gene Location: 43585-44775 bp Feature: domain Description: DUF1016_N Location: 43675-44176 bp Feature: domain Description: DUF1 01 6_N Location: 43675-441 76 bp Feature: domain Description: YhcG_C Location: 44257-44719 bp Feature: domain Description: YhcG_C Location: 44257-4471 9 bp Feature: gene Location: 44913-46319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45255-45873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45255-45873 bp Feature: domain Description: GIIM Note: maturase Location: 45927-46137 bp Feature: domain Description: GIIM Note: maturase Location: 45927-461 37 bp Feature: gene Location: 46940-48226 bp Feature: domain Description: proA Location: 46946-48224 bp Feature: domain Description: proA Location: 46946-48224 bp Feature: gene Location: 48284-49246 bp Feature: domain Description: PRK04523 Location: 48287-49232 bp Feature: domain Description: PRK04523 Location: 48287-49232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipocalin_4 (pfam13648), DUF1016_N (pfam17761), YhcG_C, RVT-GII, GIIM (pfam08388), proA (TIGR00407), PRK04523 (N-acetylornithine carbamoyltransferase; Reviewed)

Seq: VZCX01000071.1 Prevotella copri strain iAQ1183 NODE_14_length_83526_cov_18.3836_ID_27, whole genome shotgun sequence (83526 bp)
Overview 1 RT 1: 64706-72921 bp Neighborhood of RT #1 [64706, 72926] COG3292 COG3292 COG3292 Y_Y_Y BaeS PRK11107 YesN RVT_N RVT-GII GIIM PRK02813 Feature: gene Location: 64706-65125 bp Feature: gene Location: 65201-69334 bp Feature: domain Description: COG3292 Location: 65222-66218 bp Feature: domain Description: COG32 92 Location: 652 2 2 -662 18 bp Feature: domain Description: COG3292 Location: 66275-66602 bp Feature: domain Description: COG32 92 Location: 662 75-66602 bp Feature: domain Description: COG3292 Location: 66845-67148 bp Feature: domain Description: COG32 92 Location: 66845-67148 bp Feature: domain Description: Y_Y_Y Location: 67334-67523 bp Feature: domain Description: Y_Y_Y Location: 67334-6752 3 bp Feature: domain Description: BaeS Location: 67616-68312 bp Feature: domain Description: BaeS Location: 67616-68312 bp Feature: domain Description: PRK11107 Location: 68408-68813 bp Feature: domain Description: PRK11107 Location: 68408-68813 bp Feature: domain Description: YesN Location: 68981-69332 bp Feature: domain Description: YesN Location: 68981-69332 bp Feature: gene Location: 69480-70976 bp Feature: RT Description: RVT_N Location: 69546-69789 bp Feature: RT Description: RVT_N Location: 69546-69789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69834-70476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69834-70476 bp Feature: domain Description: GIIM Note: maturase Location: 70533-70764 bp Feature: domain Description: GIIM Note: maturase Location: 70533-70764 bp Feature: gene Location: 71038-71340 bp Feature: gene Location: 71640-72926 bp Feature: domain Description: PRK02813 Location: 71646-72921 bp Feature: domain Description: PRK02 813 Location: 71646-72 92 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), BaeS (COG0642), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), YesN (COG4753), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK02813 (putative aminopeptidase 2; Provisional)

Seq: VZCX01000050.1 Prevotella copri strain iAQ1183 NODE_24_length_57762_cov_21.367_ID_47, whole genome shotgun sequence (57762 bp)
Overview 1 RT 1: 9329-14089 bp Neighborhood of RT #1 [9329, 14089] RVT-DGRs Feature: gene Location: 9329-10447 bp Feature: gene Location: 10467-10892 bp Feature: gene Location: 10913-12394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11129-11840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11129-11840 bp Feature: gene Location: 12614-12748 bp Feature: gene Location: 12821-14089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VZCX01000060.1 Prevotella copri strain iAQ1183 NODE_43_length_27003_cov_22.1946_ID_85, whole genome shotgun sequence (27003 bp)
Overview 1 RT 1: 23945-26708 bp Neighborhood of RT #1 [23945, 26887] COG3617 ANT RVT-GII GIIM Feature: gene Location: 23945-24949 bp Feature: domain Description: COG3617 Location: 24008-24494 bp Feature: domain Description: COG3617 Location: 24 008-24 4 94 bp Feature: domain Description: ANT Location: 24578-24917 bp Feature: domain Description: ANT Location: 24 578-24 917 bp Feature: gene Location: 25265-25435 bp Feature: gene Location: 25481-26887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25823-26441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25823-264 4 1 bp Feature: domain Description: GIIM Note: maturase Location: 26495-26708 bp Feature: domain Description: GIIM Note: maturase Location: 264 95-26708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3617 (Prophage antirepressor ), ANT (pfam03374), RVT-GII, GIIM (pfam08388)

Seq: VZCX01000036.1 Prevotella copri strain iAQ1183 NODE_4_length_185525_cov_18.2333_ID_7, whole genome shotgun sequence (185525 bp)
Overview 1 RT 1: 91856-95170 bp Neighborhood of RT #1 [91856, 95170] Avd_like RVT-DGRs DUF5106 Thioredoxin_8 Feature: gene Location: 91856-92248 bp Feature: domain Description: Avd_like Location: 91883-92192 bp Feature: domain Description: Avd_like Location: 91883-92192 bp Feature: gene Location: 92485-92715 bp Feature: gene Location: 92714-93973 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92924-93644 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92924-93644 bp Feature: gene Location: 93988-94842 bp Feature: domain Description: DUF5106 Location: 94084-94420 bp Feature: domain Description: DUF5 106 Location: 94084-94420 bp Feature: domain Description: Thioredoxin_8 Location: 94504-94780 bp Feature: domain Description: Thioredoxin_8 Location: 945 04-94780 bp Feature: gene Location: 95000-95170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF5106 (pfam17127), Thioredoxin_8 (pfam13905)

Seq: VZCX01000085.1 Prevotella copri strain iAQ1183 NODE_59_length_16159_cov_19.1765_ID_117, whole genome shotgun sequence (16159 bp)
Overview 1 RT 1: 133-5904 bp Neighborhood of RT #1 [133, 5918] Glyco_hydro2_C5 RVT-GII GIIM KefB Na_H_Antiporter_C SDF Feature: gene Location: 133-363 bp Feature: domain Description: Glyco_hydro2_C5 Location: 139-346 bp Feature: domain Description: Glyco_hydro2_C5 Location: 139-346 bp Feature: gene Location: 826-2232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1168-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116 8-1786 bp Feature: domain Description: GIIM Note: maturase Location: 1840-2047 bp Feature: domain Description: GIIM Note: maturase Location: 1840-2047 bp Feature: gene Location: 2340-4469 bp Feature: domain Description: KefB Location: 2382-3525 bp Feature: domain Description: KefB Location: 2382-3525 bp Feature: domain Description: Na_H_Antiporter_C Location: 3588-3933 bp Feature: domain Description: Na_H_Antiporter_C Location: 3588-3933 bp Feature: gene Location: 4635-5918 bp Feature: domain Description: SDF Location: 4743-5904 bp Feature: domain Description: SDF Location: 4743-5904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro2_C5 (pfam18565), KefB (COG0475), Na_H_Antiporter_C (cd01988), SDF (pfam00375), RVT-GII, GIIM (pfam08388)