myRT

myRT report for GCA_009493995.1_ASM949399v1

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Seq: VZCV01000148.1 Prevotella copri strain iAQ1174 NODE_20_length_58785_cov_5.07604_ID_57, whole genome shotgun sequence (58785 bp)
Overview 1 RT 1: 21792-27520 bp Neighborhood of RT #1 [21792, 27520] COG1373 RVT-GII GIIM PRK09077 Feature: gene Location: 21792-23090 bp Feature: domain Description: COG1373 Location: 21807-22956 bp Feature: domain Description: COG1 373 Location: 21 807-22956 bp Feature: gene Location: 23217-23441 bp Feature: gene Location: 23776-25182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24118-24736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 1 8-24736 bp Feature: domain Description: GIIM Note: maturase Location: 24790-24997 bp Feature: domain Description: GIIM Note: maturase Location: 24790-24997 bp Feature: gene Location: 25293-26882 bp Feature: domain Description: PRK09077 Location: 25302-26868 bp Feature: domain Description: PRK09077 Location: 25302-26868 bp Feature: gene Location: 27116-27520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), PRK09077 (L-aspartate oxidase; Provisional)

Seq: VZCV01000003.1 Prevotella copri strain iAQ1174 NODE_33_length_44960_cov_4.66111_ID_11, whole genome shotgun sequence (44960 bp)
Overview 1 RT 1: 35648-43863 bp Neighborhood of RT #1 [35648, 43868] COG3292 COG3292 COG3292 Y_Y_Y BaeS PRK11107 YesN RVT_N RVT-GII GIIM PRK02813 Feature: gene Location: 35648-36067 bp Feature: gene Location: 36143-40276 bp Feature: domain Description: COG3292 Location: 36164-37160 bp Feature: domain Description: COG32 92 Location: 36164-37160 bp Feature: domain Description: COG3292 Location: 37217-37544 bp Feature: domain Description: COG32 92 Location: 372 17-37544 bp Feature: domain Description: COG3292 Location: 37787-38090 bp Feature: domain Description: COG32 92 Location: 37787-38090 bp Feature: domain Description: Y_Y_Y Location: 38276-38465 bp Feature: domain Description: Y_Y_Y Location: 382 76-38465 bp Feature: domain Description: BaeS Location: 38558-39254 bp Feature: domain Description: BaeS Location: 38558-392 54 bp Feature: domain Description: PRK11107 Location: 39350-39755 bp Feature: domain Description: PRK11107 Location: 39350-39755 bp Feature: domain Description: YesN Location: 39923-40274 bp Feature: domain Description: YesN Location: 3992 3-402 74 bp Feature: gene Location: 40422-41918 bp Feature: RT Description: RVT_N Location: 40488-40731 bp Feature: RT Description: RVT_N Location: 40488-40731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40776-41418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40776-41418 bp Feature: domain Description: GIIM Note: maturase Location: 41475-41706 bp Feature: domain Description: GIIM Note: maturase Location: 41475-41706 bp Feature: gene Location: 41980-42282 bp Feature: gene Location: 42582-43868 bp Feature: domain Description: PRK02813 Location: 42588-43863 bp Feature: domain Description: PRK02 813 Location: 42 588-43863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), BaeS (COG0642), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), YesN (COG4753), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK02813 (putative aminopeptidase 2; Provisional)

Seq: VZCV01000083.1 Prevotella copri strain iAQ1174 NODE_81_length_13417_cov_5.09557_ID_175, whole genome shotgun sequence (13416 bp)
Overview 1 RT 1: 8208-11522 bp Neighborhood of RT #1 [8208, 11522] Avd_like RVT-DGRs DUF5106 Thioredoxin_8 Feature: gene Location: 8208-8600 bp Feature: domain Description: Avd_like Location: 8235-8544 bp Feature: domain Description: Avd_like Location: 823 5-8544 bp Feature: gene Location: 8837-9067 bp Feature: gene Location: 9066-10325 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9276-9996 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9276-9996 bp Feature: gene Location: 10340-11194 bp Feature: domain Description: DUF5106 Location: 10436-10772 bp Feature: domain Description: DUF5106 Location: 1043 6-10772 bp Feature: domain Description: Thioredoxin_8 Location: 10856-11132 bp Feature: domain Description: Thioredoxin_8 Location: 10856-1113 2 bp Feature: gene Location: 11352-11522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), Avd_like (cd16376), RVT-DGRs

Seq: VZCV01000110.1 Prevotella copri strain iAQ1174 NODE_93_length_9632_cov_3.87752_ID_9, whole genome shotgun sequence (9632 bp)
Overview 1 RT 1: 934-7580 bp Neighborhood of RT #1 [934, 7580] RVT-DGRs Feature: gene Location: 934-2313 bp Feature: gene Location: 2619-2765 bp Feature: gene Location: 2834-4258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3038-3641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3038-364 1 bp Feature: gene Location: 4255-4707 bp Feature: gene Location: 4725-7580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VZCV01000129.1 Prevotella copri strain iAQ1174 NODE_95_length_9507_cov_5.22186_ID_199, whole genome shotgun sequence (9507 bp)
Overview 1 RT 1: 6145-8656 bp Neighborhood of RT #1 [6145, 9210] RVT-DGRs Feature: gene Location: 6145-7263 bp Feature: gene Location: 7283-7708 bp Feature: gene Location: 7729-9210 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7945-8656 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7945 -865 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs