myRT

myRT report for GCA_009494015.1_ASM949401v1

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Seq: VZCU01000037.1 Prevotella copri strain iAQ1172 NODE_21_length_64140_cov_157.559_ID_41, whole genome shotgun sequence (64140 bp)
Overview 1 RT 1: 21792-27520 bp Neighborhood of RT #1 [21792, 27520] COG1373 RVT-GII GIIM PRK09077 Feature: gene Location: 21792-23090 bp Feature: domain Description: COG1373 Location: 21807-22956 bp Feature: domain Description: COG1 373 Location: 21 807-22956 bp Feature: gene Location: 23217-23441 bp Feature: gene Location: 23776-25182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24118-24736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 1 8-24736 bp Feature: domain Description: GIIM Note: maturase Location: 24790-24997 bp Feature: domain Description: GIIM Note: maturase Location: 24790-24997 bp Feature: gene Location: 25293-26882 bp Feature: domain Description: PRK09077 Location: 25302-26868 bp Feature: domain Description: PRK09077 Location: 25302-26868 bp Feature: gene Location: 27116-27520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), PRK09077 (L-aspartate oxidase; Provisional)

Seq: VZCU01000062.1 Prevotella copri strain iAQ1172 NODE_26_length_52598_cov_140.354_ID_51, whole genome shotgun sequence (52598 bp)
Overview 1 RT 1: 6145-10905 bp Neighborhood of RT #1 [6145, 10905] RVT-DGRs Feature: gene Location: 6145-7263 bp Feature: gene Location: 7283-7708 bp Feature: gene Location: 7729-9210 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7945-8656 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7945-8656 bp Feature: gene Location: 9430-9564 bp Feature: gene Location: 9637-10905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VZCU01000029.1 Prevotella copri strain iAQ1172 NODE_4_length_135444_cov_127.367_ID_7, whole genome shotgun sequence (135444 bp)
Overview 1 RT 1: 10354-19939 bp 2 RT 2: 56826-64594 bp Neighborhood of RT #1 [10354, 20037] AAA_14 PRK02813 RVT_N RVT-GII GIIM COG3292 COG3292 COG3292 Y_Y_Y BaeS PRK11107 YesN Cellulase Neighborhood of RT #2 [56826, 64594] RVT-DGRs Feature: gene Location: 10354-10764 bp Feature: domain Description: AAA_14 Location: 10411-10735 bp Feature: domain Description: AAA_14 Location: 10411-1073 5 bp Feature: gene Location: 10913-12199 bp Feature: domain Description: PRK02813 Location: 10919-12194 bp Feature: domain Description: PRK02813 Location: 10919-12194 bp Feature: gene Location: 12863-14359 bp Feature: RT Description: RVT_N Location: 12929-13172 bp Feature: RT Description: RVT_N Location: 12929-13 172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13217-13859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 217-13 859 bp Feature: domain Description: GIIM Note: maturase Location: 13916-14147 bp Feature: domain Description: GIIM Note: maturase Location: 13 916-14147 bp Feature: gene Location: 14505-18638 bp Feature: domain Description: COG3292 Location: 14526-15522 bp Feature: domain Description: COG3 292 Location: 14526-15522 bp Feature: domain Description: COG3292 Location: 15579-15906 bp Feature: domain Description: COG3 292 Location: 15579-15906 bp Feature: domain Description: COG3292 Location: 16149-16452 bp Feature: domain Description: COG3 292 Location: 16149-16452 bp Feature: domain Description: Y_Y_Y Location: 16638-16827 bp Feature: domain Description: Y_Y_Y Location: 1663 8-16827 bp Feature: domain Description: BaeS Location: 16920-17616 bp Feature: domain Description: BaeS Location: 16920-17616 bp Feature: domain Description: PRK11107 Location: 17712-18117 bp Feature: domain Description: PRK11107 Location: 17712-18117 bp Feature: domain Description: YesN Location: 18285-18636 bp Feature: domain Description: YesN Location: 18285-1863 6 bp Feature: gene Location: 18817-20037 bp Feature: domain Description: Cellulase Location: 19054-19939 bp Feature: domain Description: Cellulase Location: 19054-1993 9 bp Feature: gene Location: 56826-59681 bp Feature: gene Location: 59699-60151 bp Feature: gene Location: 60148-61572 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60352-60955 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 603 52-60955 bp Feature: gene Location: 62093-63472 bp Feature: gene Location: 63494-64594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_14 (pfam13173), PRK02813 (putative aminopeptidase 2; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), BaeS (COG0642), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), YesN (COG4753)
Cellulase (pfam00150), RVT-DGRs

Seq: VZCU01000099.1 Prevotella copri strain iAQ1172 NODE_60_length_14675_cov_152.112_ID_119, whole genome shotgun sequence (14676 bp)
Overview 1 RT 1: 8071-11385 bp Neighborhood of RT #1 [8071, 11385] Avd_like RVT-DGRs DUF5106 Thioredoxin_8 Feature: gene Location: 8071-8463 bp Feature: domain Description: Avd_like Location: 8098-8407 bp Feature: domain Description: Avd_like Location: 8098-84 07 bp Feature: gene Location: 8700-8930 bp Feature: gene Location: 8929-10188 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9139-9859 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9139-9859 bp Feature: gene Location: 10203-11057 bp Feature: domain Description: DUF5106 Location: 10299-10635 bp Feature: domain Description: DUF5106 Location: 10299-10635 bp Feature: domain Description: Thioredoxin_8 Location: 10719-10995 bp Feature: domain Description: Thioredoxin_8 Location: 10719-10995 bp Feature: gene Location: 11215-11385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), Avd_like (cd16376), RVT-DGRs