myRT

myRT report for GCA_009494135.1_ASM949413v1

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Seq: VZCN01000112.1 Prevotella copri strain iAK278 NODE_13_length_29544_cov_5.05809_ID_119, whole genome shotgun sequence (29544 bp)
Overview 1 RT 1: 11726-16436 bp Neighborhood of RT #1 [11726, 16456] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11726-12520 bp Feature: domain Description: FldA Location: 11735-12011 bp Feature: domain Description: FldA Location: 1 1 735-1 201 1 bp Feature: domain Description: NapF Location: 12239-12461 bp Feature: domain Description: NapF Location: 1 2239-1 2461 bp Feature: gene Location: 13022-13186 bp Feature: gene Location: 13183-14262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13387-14044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3387-1 4044 bp Feature: gene Location: 14347-15324 bp Feature: domain Description: LysR Location: 14446-15301 bp Feature: domain Description: LysR Location: 1 4446-1 5301 bp Feature: gene Location: 15410-16456 bp Feature: domain Description: YeiH Location: 15428-16436 bp Feature: domain Description: YeiH Location: 1 5428-1 6436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZCN01000149.1 Prevotella copri strain iAK278 NODE_19_length_23775_cov_3.53331_ID_71, whole genome shotgun sequence (23775 bp)
Overview 1 RT 1: 18045-22911 bp Neighborhood of RT #1 [18045, 23402] PDDEXK_2 PDDEXK_2 Yae1_N T_den_put_tspse RVT-GII GIIM Peptidase_S41_CPP Feature: gene Location: 18045-19037 bp Feature: domain Description: PDDEXK_2 Location: 18066-18432 bp Feature: domain Description: PDDEXK_2 Location: 18066-18432 bp Feature: domain Description: PDDEXK_2 Location: 18603-18792 bp Feature: domain Description: PDDEXK_2 Location: 18603-18792 bp Feature: domain Description: Yae1_N Location: 18795-18867 bp Feature: domain Description: Yae1_N Location: 18795-18867 bp Feature: domain Description: T_den_put_tspse Location: 18885-19035 bp Feature: domain Description: T_den_put_tspse Location: 18885-19035 bp Feature: gene Location: 19299-19469 bp Feature: gene Location: 19515-20921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19857-20475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19857-2 0475 bp Feature: domain Description: GIIM Note: maturase Location: 20529-20742 bp Feature: domain Description: GIIM Note: maturase Location: 2 052 9-2 0742 bp Feature: gene Location: 21525-21716 bp Feature: gene Location: 21738-23402 bp Feature: domain Description: Peptidase_S41_CPP Location: 21831-22911 bp Feature: domain Description: Peptidase_S41_CPP Location: 2 1831-2 2 911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), Yae1_N (pfam09811), T_den_put_tspse (TIGR01784), RVT-GII, GIIM (pfam08388), Peptidase_S41_CPP (cd07560)

Seq: VZCN01000371.1 Prevotella copri strain iAK278 NODE_3_length_63858_cov_3.67555_ID_29, whole genome shotgun sequence (63858 bp)
Overview 1 RT 1: 51913-59497 bp Neighborhood of RT #1 [51913, 59508] Glyco_hydro_127 DUF4986 GH43_Xsa43E-like CBM6_xylanase-like RVT-GII GIIM COG1373 Feature: gene Location: 51913-54297 bp Feature: domain Description: Glyco_hydro_127 Location: 52012-53545 bp Feature: domain Description: Glyco_hydro_127 Location: 52012-53 545 bp Feature: domain Description: DUF4986 Location: 53560-53806 bp Feature: domain Description: DUF4986 Location: 53 560-53 806 bp Feature: gene Location: 54398-55744 bp Feature: domain Description: GH43_Xsa43E-like Location: 54497-55289 bp Feature: domain Description: GH43 _Xsa43 E-like Location: 54497-55289 bp Feature: domain Description: CBM6_xylanase-like Location: 55352-55736 bp Feature: domain Description: CBM6_xylanase-like Location: 553 52-5573 6 bp Feature: gene Location: 56061-57464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56403-57021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56403 -57021 bp Feature: domain Description: GIIM Note: maturase Location: 57075-57285 bp Feature: domain Description: GIIM Note: maturase Location: 57075-57285 bp Feature: gene Location: 57877-58032 bp Feature: gene Location: 58339-59508 bp Feature: domain Description: COG1373 Location: 58435-59497 bp Feature: domain Description: COG13 73 Location: 5843 5-59497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: VZCN01000021.1 Prevotella copri strain iAK278 NODE_6_length_38925_cov_5.65585_ID_45, whole genome shotgun sequence (38925 bp)
Overview 1 RT 1: 123-2798 bp Neighborhood of RT #1 [123, 2818] RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 123-1232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 65-1083 bp Feature: gene Location: 1331-1525 bp Feature: gene Location: 1733-2818 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1748-2798 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 174 8-2798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GT9_LPS_heptosyltransferase (cd03789)