myRT

myRT report for GCA_009494175.1_ASM949417v1

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Seq: VZCM01000089.1 Prevotella copri strain iAK2718 NODE_47_length_23242_cov_5.32346_ID_97, whole genome shotgun sequence (23242 bp)
Overview 1 RT 1: 17847-20935 bp Neighborhood of RT #1 [17847, 21633] RVT-UG17 SLATT_5 DUF4062 Feature: gene Location: 17847-17990 bp Feature: gene Location: 18163-18339 bp Feature: gene Location: 18502-19884 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 18721-19336 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 8721 -1 9336 bp Feature: gene Location: 20022-20618 bp Feature: domain Description: SLATT_5 Location: 20028-20577 bp Feature: domain Description: SLATT_5 Location: 20028-20577 bp Feature: gene Location: 20662-21633 bp Feature: domain Description: DUF4062 Location: 20677-20935 bp Feature: domain Description: DUF4062 Location: 20677-20935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), DUF4062 (pfam13271)

Seq: VZCM01000029.1 Prevotella copri strain iAK2718 NODE_4_length_126981_cov_9.30167_ID_11, whole genome shotgun sequence (126981 bp)
Overview 1 RT 1: 63664-69299 bp Neighborhood of RT #1 [63664, 69299] thrS UMPK_like NptA RVT-GII GIIM Feature: gene Location: 63664-65325 bp Feature: domain Description: thrS Location: 63679-64270 bp Feature: domain Description: thrS Location: 63679-642 70 bp Feature: domain Description: UMPK_like Location: 64534-65125 bp Feature: domain Description: UMPK_like Location: 64534-6512 5 bp Feature: gene Location: 65498-67207 bp Feature: domain Description: NptA Location: 65513-67184 bp Feature: domain Description: NptA Location: 65513-67184 bp Feature: gene Location: 67333-68739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67678-68293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67678-682 93 bp Feature: domain Description: GIIM Note: maturase Location: 68347-68560 bp Feature: domain Description: GIIM Note: maturase Location: 68347-68560 bp Feature: gene Location: 68785-68955 bp Feature: gene Location: 69144-69299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thrS (TIGR00418), UMPK_like (cd02028), NptA (COG1283), RVT-GII, GIIM (pfam08388)

Seq: VZCM01000048.1 Prevotella copri strain iAK2718 NODE_69_length_10660_cov_17.2781_ID_139, whole genome shotgun sequence (10660 bp)
Overview 1 RT 1: 4586-10480 bp Neighborhood of RT #1 [4586, 10659] DUF4254 GT9_LPS_heptosyltransferase RVT-GII GIIM PRK09375 DDE_Tnp_1 Feature: gene Location: 4586-5188 bp Feature: domain Description: DUF4254 Location: 4703-5129 bp Feature: domain Description: DUF4254 Location: 4703 -5129 bp Feature: gene Location: 5284-6369 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 5299-6349 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 5299-63 49 bp Feature: gene Location: 6576-7982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6918-7536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6918-753 6 bp Feature: domain Description: GIIM Note: maturase Location: 7593-7794 bp Feature: domain Description: GIIM Note: maturase Location: 7593 -7794 bp Feature: gene Location: 8725-9834 bp Feature: domain Description: PRK09375 Location: 8893-9829 bp Feature: domain Description: PRK093 75 Location: 8893 -9829 bp Feature: gene Location: 9886-10659 bp Feature: domain Description: DDE_Tnp_1 Location: 9949-10480 bp Feature: domain Description: DDE_Tnp_1 Location: 9949-10480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4254 (pfam14063), GT9_LPS_heptosyltransferase (cd03789), RVT-GII, GIIM (pfam08388), PRK09375 (quinolinate synthase NadA), DDE_Tnp_1 (pfam01609)