myRT

myRT report for GCA_009494195.1_ASM949419v1

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Seq: VZCK01000046.1 Prevotella copri strain iAK2711 NODE_19_length_62859_cov_127.286_ID_37, whole genome shotgun sequence (62859 bp)
Overview 1 RT 1: 14083-18113 bp Neighborhood of RT #1 [14083, 18113] DUF4062 SLATT_5 RVT-UG17 Feature: gene Location: 14083-15054 bp Feature: domain Description: DUF4062 Location: 14098-14356 bp Feature: domain Description: DUF4062 Location: 1 4098-1 4356 bp Feature: gene Location: 15098-15694 bp Feature: domain Description: SLATT_5 Location: 15104-15653 bp Feature: domain Description: SLATT_5 Location: 1 51 04-1 5653 bp Feature: gene Location: 15832-17214 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16051-16666 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 6051 -1 6666 bp Feature: gene Location: 17377-17553 bp Feature: gene Location: 17910-18113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), SLATT_5 (pfam18160), RVT-UG17

Seq: VZCK01000042.1 Prevotella copri strain iAK2711 NODE_2_length_162745_cov_156.346_ID_3, whole genome shotgun sequence (162745 bp)
Overview 1 RT 1: 37037-42472 bp Neighborhood of RT #1 [37037, 42672] RVT-GII GIIM NptA thrS UMPK_like Feature: gene Location: 37037-37192 bp Feature: gene Location: 37381-37551 bp Feature: gene Location: 37597-39003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37942-38557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37942 -38557 bp Feature: domain Description: GIIM Note: maturase Location: 38611-38824 bp Feature: domain Description: GIIM Note: maturase Location: 38611-3882 4 bp Feature: gene Location: 39129-40838 bp Feature: domain Description: NptA Location: 39144-40815 bp Feature: domain Description: NptA Location: 39144-40815 bp Feature: gene Location: 41011-42672 bp Feature: domain Description: thrS Location: 41026-41617 bp Feature: domain Description: thrS Location: 4102 6-41617 bp Feature: domain Description: UMPK_like Location: 41881-42472 bp Feature: domain Description: UMPK_like Location: 41881-42 472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NptA (COG1283), thrS (TIGR00418), UMPK_like (cd02028)

Seq: VZCK01000076.1 Prevotella copri strain iAK2711 NODE_65_length_10282_cov_230.18_ID_129, whole genome shotgun sequence (10282 bp)
Overview 1 RT 1: 4586-10102 bp Neighborhood of RT #1 [4586, 10281] DUF4254 GT9_LPS_heptosyltransferase RVT-GII GIIM PRK09375 DDE_Tnp_1 Feature: gene Location: 4586-5188 bp Feature: domain Description: DUF4254 Location: 4703-5129 bp Feature: domain Description: DUF4254 Location: 4703 -5129 bp Feature: gene Location: 5284-6369 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 5299-6349 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 5299-63 49 bp Feature: gene Location: 6576-7982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6918-7536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6918-753 6 bp Feature: domain Description: GIIM Note: maturase Location: 7593-7794 bp Feature: domain Description: GIIM Note: maturase Location: 7593 -7794 bp Feature: gene Location: 8725-9834 bp Feature: domain Description: PRK09375 Location: 8893-9829 bp Feature: domain Description: PRK093 75 Location: 8893 -9829 bp Feature: gene Location: 9886-10281 bp Feature: domain Description: DDE_Tnp_1 Location: 9928-10102 bp Feature: domain Description: DDE_Tnp_1 Location: 9928-10102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4254 (pfam14063), GT9_LPS_heptosyltransferase (cd03789), RVT-GII, GIIM (pfam08388), PRK09375 (quinolinate synthase NadA), DDE_Tnp_1 (pfam01609)