myRT

myRT report for GCA_009494235.1_ASM949423v1

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Seq: VZCJ01000019.1 Prevotella copri strain iAK2616 NODE_20_length_66309_cov_182.863_ID_39, whole genome shotgun sequence (66309 bp)
Overview 1 RT 1: 63325-66108 bp Neighborhood of RT #1 [63325, 66125] Avd_like RVT-DGRs XerC Feature: gene Location: 63325-63720 bp Feature: domain Description: Avd_like Location: 63361-63679 bp Feature: domain Description: Avd_like Location: 63361 -63679 bp Feature: gene Location: 63793-63960 bp Feature: gene Location: 63987-65306 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64173-64863 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 641 73-64863 bp Feature: gene Location: 65349-66125 bp Feature: domain Description: XerC Location: 65400-66108 bp Feature: domain Description: XerC Location: 65400-661 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZCJ01000069.1 Prevotella copri strain iAK2616 NODE_27_length_48849_cov_272.305_ID_53, whole genome shotgun sequence (48849 bp)
Overview 1 RT 1: 24204-28731 bp Neighborhood of RT #1 [24204, 28751] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24204-25205 bp Feature: domain Description: PRK09375 Location: 24264-25200 bp Feature: domain Description: PRK09375 Location: 2 42 64-2 52 00 bp Feature: gene Location: 25517-25675 bp Feature: gene Location: 26056-27165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26398-27016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6398-2 7016 bp Feature: gene Location: 27264-27458 bp Feature: gene Location: 27666-28751 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 27681-28731 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 7681-2 8731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZCJ01000042.1 Prevotella copri strain iAK2616 NODE_36_length_29775_cov_278.553_ID_71, whole genome shotgun sequence (29775 bp)
Overview 1 RT 1: 11957-16667 bp Neighborhood of RT #1 [11957, 16687] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11957-12751 bp Feature: domain Description: FldA Location: 11966-12242 bp Feature: domain Description: FldA Location: 11966-12242 bp Feature: domain Description: NapF Location: 12470-12692 bp Feature: domain Description: NapF Location: 12470-12692 bp Feature: gene Location: 13253-13417 bp Feature: gene Location: 13414-14493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13618-14275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 618-14275 bp Feature: gene Location: 14578-15555 bp Feature: domain Description: LysR Location: 14677-15532 bp Feature: domain Description: LysR Location: 14677-1553 2 bp Feature: gene Location: 15641-16687 bp Feature: domain Description: YeiH Location: 15659-16667 bp Feature: domain Description: YeiH Location: 15659-16667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZCJ01000027.1 Prevotella copri strain iAK2616 NODE_84_length_1732_cov_424.194_ID_167, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235-14 4 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZCJ01000035.1 Prevotella copri strain iAK2616 NODE_8_length_98387_cov_226.253_ID_15, whole genome shotgun sequence (98387 bp)
Overview 1 RT 1: 61384-68968 bp Neighborhood of RT #1 [61384, 68979] Glyco_hydro_127 DUF4986 GH43_Xsa43E-like CBM6_xylanase-like RVT-GII GIIM COG1373 Feature: gene Location: 61384-63768 bp Feature: domain Description: Glyco_hydro_127 Location: 61483-63016 bp Feature: domain Description: Glyco_hydro_127 Location: 61483-63016 bp Feature: domain Description: DUF4986 Location: 63031-63277 bp Feature: domain Description: DUF4986 Location: 63031-63277 bp Feature: gene Location: 63869-65215 bp Feature: domain Description: GH43_Xsa43E-like Location: 63968-64760 bp Feature: domain Description: GH43_Xsa43E-like Location: 63968-64760 bp Feature: domain Description: CBM6_xylanase-like Location: 64823-65207 bp Feature: domain Description: CBM6_xylanase-like Location: 64823-65 207 bp Feature: gene Location: 65532-66935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65874-66492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 874-66492 bp Feature: domain Description: GIIM Note: maturase Location: 66546-66756 bp Feature: domain Description: GIIM Note: maturase Location: 665 46-6675 6 bp Feature: gene Location: 67348-67503 bp Feature: gene Location: 67810-68979 bp Feature: domain Description: COG1373 Location: 67906-68968 bp Feature: domain Description: COG1373 Location: 67906-68968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )