myRT

myRT report for GCA_009494245.1_ASM949424v1

Download annotations/find similar RTs

Seq: VZCI01000015.1 Prevotella copri strain iAK128 NODE_28_length_48925_cov_15.5273_ID_57, whole genome shotgun sequence (48925 bp)
Overview 1 RT 1: 24241-28768 bp Neighborhood of RT #1 [24241, 28788] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24241-25242 bp Feature: domain Description: PRK09375 Location: 24301-25237 bp Feature: domain Description: PRK09375 Location: 24301 -25237 bp Feature: gene Location: 25554-25712 bp Feature: gene Location: 26093-27202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26435-27053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26435-27053 bp Feature: gene Location: 27301-27495 bp Feature: gene Location: 27703-28788 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 27718-28768 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2771 8-28768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZCI01000085.1 Prevotella copri strain iAK128 NODE_35_length_31147_cov_16.5608_ID_71, whole genome shotgun sequence (31147 bp)
Overview 1 RT 1: 12021-16731 bp Neighborhood of RT #1 [12021, 16751] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 12021-12815 bp Feature: domain Description: FldA Location: 12030-12306 bp Feature: domain Description: FldA Location: 12 030-12 306 bp Feature: domain Description: NapF Location: 12534-12756 bp Feature: domain Description: NapF Location: 12 534-12 756 bp Feature: gene Location: 13317-13481 bp Feature: gene Location: 13478-14557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13682-14339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13682 -14339 bp Feature: gene Location: 14726-15619 bp Feature: domain Description: LysR Location: 14741-15596 bp Feature: domain Description: LysR Location: 14741-15596 bp Feature: gene Location: 15705-16751 bp Feature: domain Description: YeiH Location: 15723-16731 bp Feature: domain Description: YeiH Location: 1572 3-16731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZCI01000034.1 Prevotella copri strain iAK128 NODE_54_length_11364_cov_8.20064_ID_41, whole genome shotgun sequence (11364 bp)
Overview 1 RT 1: 8380-11163 bp Neighborhood of RT #1 [8380, 11180] Avd_like RVT-DGRs XerC Feature: gene Location: 8380-8775 bp Feature: domain Description: Avd_like Location: 8416-8734 bp Feature: domain Description: Avd_like Location: 8416-873 4 bp Feature: gene Location: 8848-9015 bp Feature: gene Location: 9042-10361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9228-9918 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9228-9918 bp Feature: gene Location: 10404-11180 bp Feature: domain Description: XerC Location: 10455-11163 bp Feature: domain Description: XerC Location: 10455-11163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), Avd_like (cd16376), RVT-DGRs

Seq: VZCI01000084.1 Prevotella copri strain iAK128 NODE_79_length_1732_cov_20.0978_ID_157, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235-14 4 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZCI01000023.1 Prevotella copri strain iAK128 NODE_7_length_98385_cov_10.7825_ID_13, whole genome shotgun sequence (98385 bp)
Overview 1 RT 1: 61384-68968 bp Neighborhood of RT #1 [61384, 68979] Glyco_hydro_127 DUF4986 GH43_Xsa43E-like CBM6_xylanase-like RVT-GII GIIM COG1373 Feature: gene Location: 61384-63768 bp Feature: domain Description: Glyco_hydro_127 Location: 61483-63016 bp Feature: domain Description: Glyco_hydro_127 Location: 61483-63016 bp Feature: domain Description: DUF4986 Location: 63031-63277 bp Feature: domain Description: DUF4986 Location: 63031-63277 bp Feature: gene Location: 63869-65215 bp Feature: domain Description: GH43_Xsa43E-like Location: 63968-64760 bp Feature: domain Description: GH43_Xsa43E-like Location: 63968-64760 bp Feature: domain Description: CBM6_xylanase-like Location: 64823-65207 bp Feature: domain Description: CBM6_xylanase-like Location: 64823-65 207 bp Feature: gene Location: 65532-66935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65874-66492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 874-66492 bp Feature: domain Description: GIIM Note: maturase Location: 66546-66756 bp Feature: domain Description: GIIM Note: maturase Location: 665 46-6675 6 bp Feature: gene Location: 67348-67503 bp Feature: gene Location: 67810-68979 bp Feature: domain Description: COG1373 Location: 67906-68968 bp Feature: domain Description: COG1373 Location: 67906-68968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )