myRT

myRT report for GCA_009494275.1_ASM949427v1

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Seq: VZCG01000005.1 Prevotella copri strain iAK1214 NODE_21_length_63891_cov_85.5716_ID_41, whole genome shotgun sequence (63891 bp)
Overview 1 RT 1: 15115-19145 bp Neighborhood of RT #1 [15115, 19145] DUF4062 SLATT_5 RVT-UG17 Feature: gene Location: 15115-16086 bp Feature: domain Description: DUF4062 Location: 15130-15388 bp Feature: domain Description: DUF4062 Location: 1 51 30-1 5388 bp Feature: gene Location: 16130-16726 bp Feature: domain Description: SLATT_5 Location: 16136-16685 bp Feature: domain Description: SLATT_5 Location: 1 61 36-1 6685 bp Feature: gene Location: 16864-18246 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17083-17698 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 7083-1 7698 bp Feature: gene Location: 18409-18585 bp Feature: gene Location: 18942-19145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), SLATT_5 (pfam18160), RVT-UG17

Seq: VZCG01000016.1 Prevotella copri strain iAK1214 NODE_34_length_42776_cov_121.97_ID_67, whole genome shotgun sequence (42776 bp)
Overview 1 RT 1: 32943-38132 bp Neighborhood of RT #1 [32943, 38191] PRK09375 RVT-GII GIIM GT9_LPS_heptosyltransferase DUF4254 Feature: gene Location: 32943-33944 bp Feature: domain Description: PRK09375 Location: 33003-33939 bp Feature: domain Description: PRK09375 Location: 33003-33939 bp Feature: gene Location: 34256-34414 bp Feature: gene Location: 34795-36201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35137-35755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35137-35755 bp Feature: domain Description: GIIM Note: maturase Location: 35812-36013 bp Feature: domain Description: GIIM Note: maturase Location: 35812 -36013 bp Feature: gene Location: 36408-37493 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 36423-37473 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3642 3-37473 bp Feature: gene Location: 37589-38191 bp Feature: domain Description: DUF4254 Location: 37706-38132 bp Feature: domain Description: DUF42 54 Location: 37706-38132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GIIM (pfam08388), GT9_LPS_heptosyltransferase (cd03789), DUF4254 (pfam14063)

Seq: VZCG01000031.1 Prevotella copri strain iAK1214 NODE_3_length_180495_cov_107.423_ID_5, whole genome shotgun sequence (180495 bp)
Overview 1 RT 1: 117271-122890 bp Neighborhood of RT #1 [117271, 122890] thrS UMPK_like NptA RVT-GII GIIM Feature: gene Location: 117271-118932 bp Feature: domain Description: thrS Location: 117286-117877 bp Feature: domain Description: thrS Location: 117286-117877 bp Feature: domain Description: UMPK_like Location: 118141-118732 bp Feature: domain Description: UMPK_like Location: 118141-11873 2 bp Feature: gene Location: 119105-120814 bp Feature: domain Description: NptA Location: 119120-120791 bp Feature: domain Description: NptA Location: 119120-120791 bp Feature: gene Location: 120940-122346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121285-121900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121285-121900 bp Feature: domain Description: GIIM Note: maturase Location: 121954-122167 bp Feature: domain Description: GIIM Note: maturase Location: 121954-122167 bp Feature: gene Location: 122392-122562 bp Feature: gene Location: 122753-122890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thrS (TIGR00418), UMPK_like (cd02028), NptA (COG1283), RVT-GII, GIIM (pfam08388)