myRT

myRT report for GCA_009494285.1_ASM949428v1

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Seq: VZCH01000028.1 Prevotella copri strain iAK1218 NODE_30_length_42777_cov_130.599_ID_59, whole genome shotgun sequence (42777 bp)
Overview 1 RT 1: 32943-38132 bp Neighborhood of RT #1 [32943, 38191] PRK09375 RVT-GII GIIM GT9_LPS_heptosyltransferase DUF4254 Feature: gene Location: 32943-33944 bp Feature: domain Description: PRK09375 Location: 33003-33939 bp Feature: domain Description: PRK09375 Location: 33003-33939 bp Feature: gene Location: 34256-34414 bp Feature: gene Location: 34795-36201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35137-35755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 37-35755 bp Feature: domain Description: GIIM Note: maturase Location: 35812-36013 bp Feature: domain Description: GIIM Note: maturase Location: 3581 2-3601 3 bp Feature: gene Location: 36408-37493 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 36423-37473 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 36423-37473 bp Feature: gene Location: 37589-38191 bp Feature: domain Description: DUF4254 Location: 37706-38132 bp Feature: domain Description: DUF4254 Location: 37706-381 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GIIM (pfam08388), GT9_LPS_heptosyltransferase (cd03789), DUF4254 (pfam14063)

Seq: VZCH01000039.1 Prevotella copri strain iAK1218 NODE_43_length_22758_cov_76.6352_ID_85, whole genome shotgun sequence (22758 bp)
Overview 1 RT 1: 14051-17837 bp Neighborhood of RT #1 [14051, 17837] DUF4062 SLATT_5 RVT-UG17 Feature: gene Location: 14051-15022 bp Feature: domain Description: DUF4062 Location: 14066-14324 bp Feature: domain Description: DUF4062 Location: 14066-1432 4 bp Feature: gene Location: 15066-15662 bp Feature: domain Description: SLATT_5 Location: 15072-15621 bp Feature: domain Description: SLATT_5 Location: 15072 -1562 1 bp Feature: gene Location: 15800-17182 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16019-16634 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16019-16634 bp Feature: gene Location: 17345-17521 bp Feature: gene Location: 17694-17837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), SLATT_5 (pfam18160), RVT-UG17

Seq: VZCH01000006.1 Prevotella copri strain iAK1218 NODE_6_length_145914_cov_105.82_ID_11, whole genome shotgun sequence (145914 bp)
Overview 1 RT 1: 82419-88054 bp Neighborhood of RT #1 [82419, 88054] thrS UMPK_like NptA RVT-GII GIIM Feature: gene Location: 82419-84080 bp Feature: domain Description: thrS Location: 82434-83025 bp Feature: domain Description: thrS Location: 8243 4-83 025 bp Feature: domain Description: UMPK_like Location: 83289-83880 bp Feature: domain Description: UMPK_like Location: 83 289-83 880 bp Feature: gene Location: 84253-85962 bp Feature: domain Description: NptA Location: 84268-85939 bp Feature: domain Description: NptA Location: 84268-8593 9 bp Feature: gene Location: 86088-87494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86433-87048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8643 3 -87048 bp Feature: domain Description: GIIM Note: maturase Location: 87102-87315 bp Feature: domain Description: GIIM Note: maturase Location: 87102-873 15 bp Feature: gene Location: 87540-87710 bp Feature: gene Location: 87899-88054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thrS (TIGR00418), UMPK_like (cd02028), NptA (COG1283), RVT-GII, GIIM (pfam08388)