myRT

myRT report for GCA_009494305.1_ASM949430v1

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Seq: VZCF01000115.1 Prevotella copri strain iAK1213 NODE_20_length_63131_cov_53.8033_ID_39, whole genome shotgun sequence (63131 bp)
Overview 1 RT 1: 60147-62930 bp Neighborhood of RT #1 [60147, 62947] Avd_like RVT-DGRs XerC Feature: gene Location: 60147-60542 bp Feature: domain Description: Avd_like Location: 60183-60501 bp Feature: domain Description: Avd_like Location: 601 83-60501 bp Feature: gene Location: 60615-60782 bp Feature: gene Location: 60809-62128 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60995-61685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60995-61 685 bp Feature: gene Location: 62171-62947 bp Feature: domain Description: XerC Location: 62222-62930 bp Feature: domain Description: XerC Location: 62222-62930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZCF01000041.1 Prevotella copri strain iAK1213 NODE_26_length_48885_cov_98.1143_ID_51, whole genome shotgun sequence (48885 bp)
Overview 1 RT 1: 24241-28768 bp Neighborhood of RT #1 [24241, 28788] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24241-25242 bp Feature: domain Description: PRK09375 Location: 24301-25237 bp Feature: domain Description: PRK09375 Location: 2 4301-2 52 37 bp Feature: gene Location: 25554-25712 bp Feature: gene Location: 26093-27202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26435-27053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6435-2 7053 bp Feature: gene Location: 27301-27495 bp Feature: gene Location: 27703-28788 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 27718-28768 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 7718-2 8768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZCF01000045.1 Prevotella copri strain iAK1213 NODE_38_length_24035_cov_122.854_ID_75, whole genome shotgun sequence (24035 bp)
Overview 1 RT 1: 4909-9619 bp Neighborhood of RT #1 [4909, 9639] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 4909-5703 bp Feature: domain Description: FldA Location: 4918-5194 bp Feature: domain Description: FldA Location: 4918-5194 bp Feature: domain Description: NapF Location: 5422-5644 bp Feature: domain Description: NapF Location: 5422-5644 bp Feature: gene Location: 6205-6369 bp Feature: gene Location: 6366-7445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6570-7227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6570-7227 bp Feature: gene Location: 7614-8507 bp Feature: domain Description: LysR Location: 7629-8484 bp Feature: domain Description: LysR Location: 7629-8484 bp Feature: gene Location: 8593-9639 bp Feature: domain Description: YeiH Location: 8611-9619 bp Feature: domain Description: YeiH Location: 8611-9619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZCF01000005.1 Prevotella copri strain iAK1213 NODE_5_length_117109_cov_75.9074_ID_9, whole genome shotgun sequence (117109 bp)
Overview 1 RT 1: 61394-68978 bp Neighborhood of RT #1 [61394, 68989] Glyco_hydro_127 DUF4986 GH43_Xsa43E-like CBM6_xylanase-like RVT-GII GIIM COG1373 Feature: gene Location: 61394-63778 bp Feature: domain Description: Glyco_hydro_127 Location: 61493-63026 bp Feature: domain Description: Glyco_hydro_127 Location: 614 93-63026 bp Feature: domain Description: DUF4986 Location: 63041-63287 bp Feature: domain Description: DUF4 986 Location: 6304 1-63287 bp Feature: gene Location: 63879-65225 bp Feature: domain Description: GH43_Xsa43E-like Location: 63978-64770 bp Feature: domain Description: GH4 3_Xsa4 3E-like Location: 63978-64 770 bp Feature: domain Description: CBM6_xylanase-like Location: 64833-65217 bp Feature: domain Description: CBM6_xylanase-like Location: 64 833-65217 bp Feature: gene Location: 65542-66945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65884-66502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65884 -66502 bp Feature: domain Description: GIIM Note: maturase Location: 66556-66766 bp Feature: domain Description: GIIM Note: maturase Location: 66556-66766 bp Feature: gene Location: 67358-67513 bp Feature: gene Location: 67820-68989 bp Feature: domain Description: COG1373 Location: 67916-68978 bp Feature: domain Description: COG1373 Location: 67916-68978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: VZCF01000055.1 Prevotella copri strain iAK1213 NODE_94_length_1831_cov_139.055_ID_187, whole genome shotgun sequence (1831 bp)
Overview 1 RT 1: 104-1547 bp Neighborhood of RT #1 [104, 1726] RVT-GII GIIM Feature: gene Location: 104-274 bp Feature: gene Location: 320-1726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1280 bp Feature: domain Description: GIIM Note: maturase Location: 1334-1547 bp Feature: domain Description: GIIM Note: maturase Location: 1334-15 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)