myRT

myRT report for GCA_009494335.1_ASM949433v1

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Seq: VZCE01000028.1 Prevotella copri strain iAK1212 NODE_28_length_48888_cov_31.7521_ID_55, whole genome shotgun sequence (48888 bp)
Overview 1 RT 1: 24204-28731 bp Neighborhood of RT #1 [24204, 28751] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24204-25205 bp Feature: domain Description: PRK09375 Location: 24264-25200 bp Feature: domain Description: PRK09375 Location: 24264-25200 bp Feature: gene Location: 25517-25675 bp Feature: gene Location: 26056-27165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26398-27016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26398-2701 6 bp Feature: gene Location: 27264-27458 bp Feature: gene Location: 27666-28751 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 27681-28731 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 27681 -28731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZCE01000091.1 Prevotella copri strain iAK1212 NODE_32_length_32135_cov_16.8321_ID_63, whole genome shotgun sequence (32135 bp)
Overview 1 RT 1: 29292-32075 bp Neighborhood of RT #1 [29292, 32092] Avd_like RVT-DGRs XerC Feature: gene Location: 29292-29687 bp Feature: domain Description: Avd_like Location: 29328-29646 bp Feature: domain Description: Avd_like Location: 2 932 8-2 9646 bp Feature: gene Location: 29760-29927 bp Feature: gene Location: 29954-31273 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30140-30830 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30140-30830 bp Feature: gene Location: 31316-32092 bp Feature: domain Description: XerC Location: 31367-32075 bp Feature: domain Description: XerC Location: 31367-32 075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZCE01000020.1 Prevotella copri strain iAK1212 NODE_36_length_29839_cov_33.0566_ID_71, whole genome shotgun sequence (29839 bp)
Overview 1 RT 1: 12021-16731 bp Neighborhood of RT #1 [12021, 16751] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 12021-12815 bp Feature: domain Description: FldA Location: 12030-12306 bp Feature: domain Description: FldA Location: 1203 0-123 06 bp Feature: domain Description: NapF Location: 12534-12756 bp Feature: domain Description: NapF Location: 1253 4-12756 bp Feature: gene Location: 13317-13481 bp Feature: gene Location: 13478-14557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13682-14339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 682-143 3 9 bp Feature: gene Location: 14642-15619 bp Feature: domain Description: LysR Location: 14741-15596 bp Feature: domain Description: LysR Location: 14741-15596 bp Feature: gene Location: 15705-16751 bp Feature: domain Description: YeiH Location: 15723-16731 bp Feature: domain Description: YeiH Location: 15723 -1673 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZCE01000024.1 Prevotella copri strain iAK1212 NODE_5_length_147874_cov_23.2911_ID_9, whole genome shotgun sequence (147874 bp)
Overview 1 RT 1: 61384-68968 bp Neighborhood of RT #1 [61384, 68979] Glyco_hydro_127 DUF4986 GH43_Xsa43E-like CBM6_xylanase-like RVT-GII GIIM COG1373 Feature: gene Location: 61384-63768 bp Feature: domain Description: Glyco_hydro_127 Location: 61483-63016 bp Feature: domain Description: Glyco_hydro_127 Location: 614 83-63016 bp Feature: domain Description: DUF4986 Location: 63031-63277 bp Feature: domain Description: DUF4 986 Location: 63031-63277 bp Feature: gene Location: 63869-65215 bp Feature: domain Description: GH43_Xsa43E-like Location: 63968-64760 bp Feature: domain Description: GH4 3_Xsa4 3E-like Location: 63968-64 760 bp Feature: domain Description: CBM6_xylanase-like Location: 64823-65207 bp Feature: domain Description: CBM6_xylanase-like Location: 64 823-65207 bp Feature: gene Location: 65532-66935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65874-66492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65874 -664 92 bp Feature: domain Description: GIIM Note: maturase Location: 66546-66756 bp Feature: domain Description: GIIM Note: maturase Location: 6654 6-66756 bp Feature: gene Location: 67348-67503 bp Feature: gene Location: 67810-68979 bp Feature: domain Description: COG1373 Location: 67906-68968 bp Feature: domain Description: COG1373 Location: 67906-68968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: VZCE01000035.1 Prevotella copri strain iAK1212 NODE_81_length_1732_cov_46.7746_ID_161, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 63-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235 -1448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)