myRT

myRT report for GCA_009494345.1_ASM949434v1

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Seq: VZCA01000132.1 Prevotella copri strain BU41813 NODE_106_length_1933_cov_389.289_ID_211, whole genome shotgun sequence (1933 bp)
Overview 1 RT 1: 3-1653 bp Neighborhood of RT #1 [3, 1832] RVT-GII GIIM Feature: gene Location: 3-197 bp Feature: gene Location: 429-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771 -1 389 bp Feature: domain Description: GIIM Note: maturase Location: 1443-1653 bp Feature: domain Description: GIIM Note: maturase Location: 1 443-1 653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZCA01000051.1 Prevotella copri strain BU41813 NODE_20_length_65634_cov_25.4879_ID_39, whole genome shotgun sequence (65634 bp)
Overview 1 RT 1: 3872-7407 bp Neighborhood of RT #1 [3872, 7424] PHA00447 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 3872-4285 bp Feature: domain Description: PHA00447 Location: 3881-4265 bp Feature: domain Description: PHA00447 Location: 3881-42 65 bp Feature: gene Location: 4287-4643 bp Feature: gene Location: 4751-5935 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4934-5627 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4934-562 7 bp Feature: gene Location: 6147-6563 bp Feature: domain Description: Avd_like Location: 6180-6498 bp Feature: domain Description: Avd_like Location: 6180-6498 bp Feature: gene Location: 6639-7424 bp Feature: domain Description: DUF1566 Location: 7011-7407 bp Feature: domain Description: DUF1566 Location: 7011-7407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00447 (lysozyme), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: VZCA01000001.1 Prevotella copri strain BU41813 NODE_40_length_31659_cov_32.6925_ID_79, whole genome shotgun sequence (31660 bp)
Overview 1 RT 1: 19663-22921 bp Neighborhood of RT #1 [19663, 22977] DUF5106 Thioredoxin_8 RVT-DGRs Avd_like Feature: gene Location: 19663-19833 bp Feature: gene Location: 19991-20845 bp Feature: domain Description: DUF5106 Location: 20087-20423 bp Feature: domain Description: DUF5106 Location: 20087-20423 bp Feature: domain Description: Thioredoxin_8 Location: 20507-20783 bp Feature: domain Description: Thioredoxin_8 Location: 20507-20783 bp Feature: gene Location: 20860-22119 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21070-21790 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21070-21790 bp Feature: gene Location: 22118-22348 bp Feature: gene Location: 22585-22977 bp Feature: domain Description: Avd_like Location: 22612-22921 bp Feature: domain Description: Avd_like Location: 22612-22921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), RVT-DGRs, Avd_like (cd16376)

Seq: VZCA01000020.1 Prevotella copri strain BU41813 NODE_62_length_14717_cov_24.7352_ID_123, whole genome shotgun sequence (14717 bp)
Overview 1 RT 1: 1720-7235 bp Neighborhood of RT #1 [1720, 7696] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 1720-2046 bp Feature: domain Description: DUF4133 Location: 1738-2005 bp Feature: domain Description: DUF4 133 Location: 1738-2005 bp Feature: gene Location: 2043-3980 bp Feature: domain Description: Bac_Flav_CT_G Location: 2046-3963 bp Feature: domain Description: Bac_Flav_CT_G Location: 204 6-3963 bp Feature: gene Location: 4530-6341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4794-5616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 794 -5616 bp Feature: domain Description: Intron_maturas2 Location: 5685-6042 bp Feature: domain Description: Intron_maturas2 Location: 5685-604 2 bp Feature: domain Description: HNHc Note: nucleases Location: 6165-6312 bp Feature: domain Description: HNHc Note: nucleases Location: 6165-6312 bp Feature: gene Location: 6401-7036 bp Feature: domain Description: Bac_Flav_CT_G Location: 6452-7022 bp Feature: domain Description: Bac_Flav_CT_G Location: 64 52-7022 bp Feature: gene Location: 7067-7696 bp Feature: domain Description: DUF4141 Location: 7082-7235 bp Feature: domain Description: DUF4 14 1 Location: 7082-7235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: VZCA01000019.1 Prevotella copri strain BU41813 NODE_86_length_4639_cov_45.9649_ID_171, whole genome shotgun sequence (4639 bp)
Overview 1 RT 1: 1-3145 bp Neighborhood of RT #1 [1, 3145] RVT-DGRs Feature: gene Location: 1-1116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211-952 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211-95 2 bp Feature: gene Location: 1156-1446 bp Feature: gene Location: 1670-3145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs