myRT

myRT report for GCA_009494395.1_ASM949439v1

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Seq: VZCB01000079.1 Prevotella copri strain iA622 NODE_1_length_373794_cov_108.855_ID_1, whole genome shotgun sequence (373794 bp)
Overview 1 RT 1: 79563-82483 bp Neighborhood of RT #1 [79563, 84813] RVT-DGRs Collagen Feature: gene Location: 79563-79790 bp Feature: gene Location: 79833-80027 bp Feature: gene Location: 80040-81464 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 80244-80847 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 80244-80847 bp Feature: gene Location: 81461-81913 bp Feature: gene Location: 81919-84813 bp Feature: domain Description: Collagen Location: 82384-82483 bp Feature: domain Description: Collagen Location: 82384-82483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Collagen (pfam01391)

Seq: VZCB01000033.1 Prevotella copri strain iA622 NODE_34_length_46028_cov_83.3126_ID_67, whole genome shotgun sequence (46028 bp)
Overview 1 RT 1: 9151-15728 bp Neighborhood of RT #1 [9151, 15728] RND_mfp HTH_ARAC RVT-GII GIIM Feature: gene Location: 9151-10434 bp Feature: domain Description: RND_mfp Location: 9493-10411 bp Feature: domain Description: RND_mfp Location: 9493-10411 bp Feature: gene Location: 10585-11712 bp Feature: domain Description: HTH_ARAC Location: 11443-11692 bp Feature: domain Description: HTH_ARAC Location: 11443-11692 bp Feature: gene Location: 12216-13622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12558-13176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 558-13176 bp Feature: domain Description: GIIM Note: maturase Location: 13230-13434 bp Feature: domain Description: GIIM Note: maturase Location: 132 30-13434 bp Feature: gene Location: 13813-14076 bp Feature: gene Location: 14091-15728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RND_mfp (TIGR01730), HTH_ARAC (smart00342), RVT-GII, GIIM (pfam08388)

Seq: VZCB01000037.1 Prevotella copri strain iA622 NODE_47_length_21762_cov_96.1339_ID_93, whole genome shotgun sequence (21762 bp)
Overview 1 RT 1: 15485-19812 bp Neighborhood of RT #1 [15485, 20090] RVT-UG17 SLATT_5 NA37 Feature: gene Location: 15485-16180 bp Feature: gene Location: 16317-16553 bp Feature: gene Location: 16852-18243 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17071-17683 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17071-17683 bp Feature: gene Location: 18403-19014 bp Feature: domain Description: SLATT_5 Location: 18409-18976 bp Feature: domain Description: SLATT_5 Location: 18409-18976 bp Feature: gene Location: 19065-20090 bp Feature: domain Description: NA37 Location: 19104-19812 bp Feature: domain Description: NA3 7 Location: 19104-19812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), NA37 (pfam04245)