myRT

myRT report for GCA_009494445.1_ASM949444v1

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Seq: VZBW01000103.1 Prevotella copri strain iAK2717 NODE_23_length_55521_cov_34.224_ID_45, whole genome shotgun sequence (55521 bp)
Overview 1 RT 1: 6745-10775 bp Neighborhood of RT #1 [6745, 10775] DUF4062 SLATT_5 RVT-UG17 Feature: gene Location: 6745-7716 bp Feature: domain Description: DUF4062 Location: 6760-7018 bp Feature: domain Description: DUF4062 Location: 6760-701 8 bp Feature: gene Location: 7760-8356 bp Feature: domain Description: SLATT_5 Location: 7766-8315 bp Feature: domain Description: SLATT_5 Location: 7766-831 5 bp Feature: gene Location: 8494-9876 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8713-9328 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 871 3-9328 bp Feature: gene Location: 10039-10215 bp Feature: gene Location: 10572-10775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), SLATT_5 (pfam18160), RVT-UG17

Seq: VZBW01000053.1 Prevotella copri strain iAK2717 NODE_5_length_126446_cov_36.8597_ID_9, whole genome shotgun sequence (126446 bp)
Overview 1 RT 1: 57829-63263 bp Neighborhood of RT #1 [57829, 63463] RVT-GII GIIM NptA thrS UMPK_like Feature: gene Location: 57829-57984 bp Feature: gene Location: 58173-58343 bp Feature: gene Location: 58389-59795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58734-59349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58734-59349 bp Feature: domain Description: GIIM Note: maturase Location: 59403-59616 bp Feature: domain Description: GIIM Note: maturase Location: 59403-59616 bp Feature: gene Location: 59921-61630 bp Feature: domain Description: NptA Location: 59936-61607 bp Feature: domain Description: NptA Location: 59936-61607 bp Feature: gene Location: 61802-63463 bp Feature: domain Description: thrS Location: 61817-62408 bp Feature: domain Description: thrS Location: 61817-62 408 bp Feature: domain Description: UMPK_like Location: 62672-63263 bp Feature: domain Description: UMPK_like Location: 62 672 -632 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NptA (COG1283), thrS (TIGR00418), UMPK_like (cd02028)

Seq: VZBW01000102.1 Prevotella copri strain iAK2717 NODE_68_length_10282_cov_57.7963_ID_135, whole genome shotgun sequence (10282 bp)
Overview 1 RT 1: 4586-10102 bp Neighborhood of RT #1 [4586, 10281] DUF4254 GT9_LPS_heptosyltransferase RVT-GII GIIM PRK09375 DDE_Tnp_1 Feature: gene Location: 4586-5188 bp Feature: domain Description: DUF4254 Location: 4703-5129 bp Feature: domain Description: DUF4254 Location: 4703 -5129 bp Feature: gene Location: 5284-6369 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 5299-6349 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 5299-63 49 bp Feature: gene Location: 6576-7982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6918-7536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6918-753 6 bp Feature: domain Description: GIIM Note: maturase Location: 7593-7794 bp Feature: domain Description: GIIM Note: maturase Location: 7593 -7794 bp Feature: gene Location: 8725-9834 bp Feature: domain Description: PRK09375 Location: 8893-9829 bp Feature: domain Description: PRK093 75 Location: 8893 -9829 bp Feature: gene Location: 9886-10281 bp Feature: domain Description: DDE_Tnp_1 Location: 9928-10102 bp Feature: domain Description: DDE_Tnp_1 Location: 9928-10102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4254 (pfam14063), GT9_LPS_heptosyltransferase (cd03789), RVT-GII, GIIM (pfam08388), PRK09375 (quinolinate synthase NadA), DDE_Tnp_1 (pfam01609)