myRT

myRT report for GCA_009494475.1_ASM949447v1

Download annotations/find similar RTs

Seq: VZBV01000027.1 Prevotella copri strain iAK2712 NODE_19_length_66490_cov_31.0949_ID_37, whole genome shotgun sequence (66491 bp)
Overview 1 RT 1: 63507-66290 bp Neighborhood of RT #1 [63507, 66307] Avd_like RVT-DGRs XerC Feature: gene Location: 63507-63902 bp Feature: domain Description: Avd_like Location: 63543-63861 bp Feature: domain Description: Avd_like Location: 63543-63861 bp Feature: gene Location: 63975-64142 bp Feature: gene Location: 64169-65488 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64355-65045 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64355-65045 bp Feature: gene Location: 65531-66307 bp Feature: domain Description: XerC Location: 65582-66290 bp Feature: domain Description: XerC Location: 65582-66290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZBV01000044.1 Prevotella copri strain iAK2712 NODE_28_length_49484_cov_48.056_ID_55, whole genome shotgun sequence (49484 bp)
Overview 1 RT 1: 24841-29368 bp Neighborhood of RT #1 [24841, 29388] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24841-25842 bp Feature: domain Description: PRK09375 Location: 24901-25837 bp Feature: domain Description: PRK09375 Location: 2 4901-2 5837 bp Feature: gene Location: 26154-26312 bp Feature: gene Location: 26693-27802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27035-27653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7035-2 7653 bp Feature: gene Location: 27901-28095 bp Feature: gene Location: 28303-29388 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 28318-29368 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 8318-2 9368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZBV01000075.1 Prevotella copri strain iAK2712 NODE_35_length_30559_cov_71.5017_ID_69, whole genome shotgun sequence (30559 bp)
Overview 1 RT 1: 11453-16163 bp Neighborhood of RT #1 [11453, 16183] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11453-12247 bp Feature: domain Description: FldA Location: 11462-11738 bp Feature: domain Description: FldA Location: 11462-1173 8 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: gene Location: 12749-12913 bp Feature: gene Location: 12910-13989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13114-13771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 114-13 771 bp Feature: gene Location: 14074-15051 bp Feature: domain Description: LysR Location: 14173-15028 bp Feature: domain Description: LysR Location: 14173 -15028 bp Feature: gene Location: 15137-16183 bp Feature: domain Description: YeiH Location: 15155-16163 bp Feature: domain Description: YeiH Location: 15155-16163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZBV01000059.1 Prevotella copri strain iAK2712 NODE_85_length_1732_cov_70.059_ID_169, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235-14 4 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZBV01000054.1 Prevotella copri strain iAK2712 NODE_8_length_98387_cov_37.5818_ID_15, whole genome shotgun sequence (98387 bp)
Overview 1 RT 1: 29409-36513 bp Neighborhood of RT #1 [29409, 37004] COG1373 RVT-GII GIIM GH43_Xsa43E-like CBM6_xylanase-like Glyco_hydro_127 DUF4986 Feature: gene Location: 29409-30578 bp Feature: domain Description: COG1373 Location: 29505-30567 bp Feature: domain Description: COG1373 Location: 295 05 -305 67 bp Feature: gene Location: 30885-31040 bp Feature: gene Location: 31453-32856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31795-32413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31795 -32413 bp Feature: domain Description: GIIM Note: maturase Location: 32467-32677 bp Feature: domain Description: GIIM Note: maturase Location: 32467-32677 bp Feature: gene Location: 33173-34519 bp Feature: domain Description: GH43_Xsa43E-like Location: 33272-34064 bp Feature: domain Description: GH43_Xsa43E-like Location: 33272-34064 bp Feature: domain Description: CBM6_xylanase-like Location: 34127-34511 bp Feature: domain Description: CBM6_xylanase-like Location: 34127-345 11 bp Feature: gene Location: 34620-37004 bp Feature: domain Description: Glyco_hydro_127 Location: 34719-36252 bp Feature: domain Description: Glyco_hydro_127 Location: 34719-3625 2 bp Feature: domain Description: DUF4986 Location: 36267-36513 bp Feature: domain Description: DUF4986 Location: 36267-365 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)