myRT

myRT report for GCA_009494485.1_ASM949448v1

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Seq: VZBX01000104.1 Prevotella copri strain BU4165 NODE_113_length_1934_cov_1620.54_ID_225, whole genome shotgun sequence (1934 bp)
Overview 1 RT 1: 1-1654 bp Neighborhood of RT #1 [1, 1833] RVT-GII GIIM Feature: gene Location: 1-198 bp Feature: gene Location: 430-1833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772-1 390 bp Feature: domain Description: GIIM Note: maturase Location: 1444-1654 bp Feature: domain Description: GIIM Note: maturase Location: 1 444-1 654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZBX01000138.1 Prevotella copri strain BU4165 NODE_14_length_65445_cov_59.2986_ID_27, whole genome shotgun sequence (65445 bp)
Overview 1 RT 1: 2819-6354 bp Neighborhood of RT #1 [2819, 6371] PHA00447 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 2819-3232 bp Feature: domain Description: PHA00447 Location: 2828-3212 bp Feature: domain Description: PHA00447 Location: 2 82 8-32 12 bp Feature: gene Location: 3234-3590 bp Feature: gene Location: 3698-4882 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3881-4574 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3881-4574 bp Feature: gene Location: 5094-5510 bp Feature: domain Description: Avd_like Location: 5127-5445 bp Feature: domain Description: Avd_like Location: 512 7-5445 bp Feature: gene Location: 5586-6371 bp Feature: domain Description: DUF1566 Location: 5958-6354 bp Feature: domain Description: DUF1566 Location: 5958-6354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00447 (lysozyme), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: VZBX01000118.1 Prevotella copri strain BU4165 NODE_31_length_42216_cov_79.0915_ID_61, whole genome shotgun sequence (42216 bp)
Overview 1 RT 1: 30219-33477 bp Neighborhood of RT #1 [30219, 33533] DUF5106 Thioredoxin_8 RVT-DGRs Avd_like Feature: gene Location: 30219-30389 bp Feature: gene Location: 30547-31401 bp Feature: domain Description: DUF5106 Location: 30643-30979 bp Feature: domain Description: DUF5106 Location: 3 0643 -3 0979 bp Feature: domain Description: Thioredoxin_8 Location: 31063-31339 bp Feature: domain Description: Thioredoxin_8 Location: 3 1063 -3 13 3 9 bp Feature: gene Location: 31416-32675 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31626-32346 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1626-3 23 46 bp Feature: gene Location: 32674-32904 bp Feature: gene Location: 33141-33533 bp Feature: domain Description: Avd_like Location: 33168-33477 bp Feature: domain Description: Avd_like Location: 3 3 168-3 3 477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), RVT-DGRs, Avd_like (cd16376)

Seq: VZBX01000013.1 Prevotella copri strain BU4165 NODE_74_length_14717_cov_68.3185_ID_147, whole genome shotgun sequence (14717 bp)
Overview 1 RT 1: 1720-7235 bp Neighborhood of RT #1 [1720, 7696] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 1720-2046 bp Feature: domain Description: DUF4133 Location: 1738-2005 bp Feature: domain Description: DUF4 133 Location: 1738-2005 bp Feature: gene Location: 2043-3980 bp Feature: domain Description: Bac_Flav_CT_G Location: 2046-3963 bp Feature: domain Description: Bac_Flav_CT_G Location: 204 6-3963 bp Feature: gene Location: 4530-6341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4794-5616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 794 -5616 bp Feature: domain Description: Intron_maturas2 Location: 5685-6042 bp Feature: domain Description: Intron_maturas2 Location: 5685-604 2 bp Feature: domain Description: HNHc Note: nucleases Location: 6165-6312 bp Feature: domain Description: HNHc Note: nucleases Location: 6165-6312 bp Feature: gene Location: 6401-7036 bp Feature: domain Description: Bac_Flav_CT_G Location: 6452-7022 bp Feature: domain Description: Bac_Flav_CT_G Location: 64 52-7022 bp Feature: gene Location: 7067-7696 bp Feature: domain Description: DUF4141 Location: 7082-7235 bp Feature: domain Description: DUF4 14 1 Location: 7082-7235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: VZBX01000097.1 Prevotella copri strain BU4165 NODE_97_length_4537_cov_108.788_ID_193, whole genome shotgun sequence (4537 bp)
Overview 1 RT 1: 1-3145 bp Neighborhood of RT #1 [1, 3145] RVT-DGRs Feature: gene Location: 1-1116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211-952 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211-95 2 bp Feature: gene Location: 1156-1446 bp Feature: gene Location: 1670-3145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs