myRT

myRT report for GCA_009494535.1_ASM949453v1

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Seq: VZBU01000007.1 Prevotella copri strain iAK2620 NODE_14_length_80390_cov_25.4926_ID_27, whole genome shotgun sequence (80390 bp)
Overview 1 RT 1: 11487-18591 bp Neighborhood of RT #1 [11487, 19082] COG1373 RVT-GII GIIM GH43_Xsa43E-like CBM6_xylanase-like Glyco_hydro_127 DUF4986 Feature: gene Location: 11487-12656 bp Feature: domain Description: COG1373 Location: 11583-12645 bp Feature: domain Description: COG1 373 Location: 1 1 583-1 2645 bp Feature: gene Location: 12963-13118 bp Feature: gene Location: 13531-14934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13873-14491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3873-1 4491 bp Feature: domain Description: GIIM Note: maturase Location: 14545-14755 bp Feature: domain Description: GIIM Note: maturase Location: 1 4545-1 4755 bp Feature: gene Location: 15266-16597 bp Feature: domain Description: GH43_Xsa43E-like Location: 15350-16142 bp Feature: domain Description: GH43_Xsa43E-like Location: 1 5350-1 61 42 bp Feature: domain Description: CBM6_xylanase-like Location: 16205-16589 bp Feature: domain Description: CBM6_xylanase-like Location: 1 6205-1 6589 bp Feature: gene Location: 16698-19082 bp Feature: domain Description: Glyco_hydro_127 Location: 16797-18330 bp Feature: domain Description: Glyco_hydro_1 27 Location: 1 6797-1 8330 bp Feature: domain Description: DUF4986 Location: 18345-18591 bp Feature: domain Description: DUF4986 Location: 1 8345-1 8591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)

Seq: VZBU01000043.1 Prevotella copri strain iAK2620 NODE_22_length_63221_cov_21.4195_ID_43, whole genome shotgun sequence (63221 bp)
Overview 1 RT 1: 60237-63020 bp Neighborhood of RT #1 [60237, 63037] Avd_like RVT-DGRs XerC Feature: gene Location: 60237-60632 bp Feature: domain Description: Avd_like Location: 60273-60591 bp Feature: domain Description: Avd_like Location: 602 73-60591 bp Feature: gene Location: 60705-60872 bp Feature: gene Location: 60899-62218 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61085-61775 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61085-61775 bp Feature: gene Location: 62261-63037 bp Feature: domain Description: XerC Location: 62312-63020 bp Feature: domain Description: XerC Location: 62 312 -6302 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZBU01000097.1 Prevotella copri strain iAK2620 NODE_32_length_47064_cov_41.9885_ID_63, whole genome shotgun sequence (47064 bp)
Overview 1 RT 1: 17677-23446 bp Neighborhood of RT #1 [17677, 23517] GT9_LPS_heptosyltransferase RVT-GII PRK09375 WcaA Feature: gene Location: 17677-18762 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 17692-18742 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 17692-18742 bp Feature: gene Location: 18970-19242 bp Feature: gene Location: 19263-20372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19605-20223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19605-20223 bp Feature: gene Location: 21223-22224 bp Feature: domain Description: PRK09375 Location: 21283-22219 bp Feature: domain Description: PRK093 75 Location: 21283 -22219 bp Feature: gene Location: 22546-23517 bp Feature: domain Description: WcaA Location: 22579-23446 bp Feature: domain Description: WcaA Location: 22579-23 446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), RVT-GII, PRK09375 (quinolinate synthase NadA), WcaA (TIGR04017)

Seq: VZBU01000031.1 Prevotella copri strain iAK2620 NODE_36_length_30562_cov_52.1551_ID_71, whole genome shotgun sequence (30562 bp)
Overview 1 RT 1: 11456-16166 bp Neighborhood of RT #1 [11456, 16186] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11456-12250 bp Feature: domain Description: FldA Location: 11465-11741 bp Feature: domain Description: FldA Location: 114 65-1174 1 bp Feature: domain Description: NapF Location: 11969-12191 bp Feature: domain Description: NapF Location: 11969-12191 bp Feature: gene Location: 12752-12916 bp Feature: gene Location: 12913-13992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13117-13774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13117-13774 bp Feature: gene Location: 14077-15054 bp Feature: domain Description: LysR Location: 14176-15031 bp Feature: domain Description: LysR Location: 14 176-15031 bp Feature: gene Location: 15140-16186 bp Feature: domain Description: YeiH Location: 15158-16166 bp Feature: domain Description: YeiH Location: 15158-16166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZBU01000107.1 Prevotella copri strain iAK2620 NODE_95_length_1732_cov_47.7138_ID_189, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 63-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235 -1448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)