myRT

myRT report for GCA_009494555.1_ASM949455v1

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Seq: VZBS01000067.1 Prevotella copri strain iAK269 NODE_18_length_66510_cov_52.1738_ID_35, whole genome shotgun sequence (66510 bp)
Overview 1 RT 1: 63526-66309 bp Neighborhood of RT #1 [63526, 66326] Avd_like RVT-DGRs XerC Feature: gene Location: 63526-63921 bp Feature: domain Description: Avd_like Location: 63562-63880 bp Feature: domain Description: Avd_like Location: 63562-63880 bp Feature: gene Location: 63994-64161 bp Feature: gene Location: 64188-65507 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64374-65064 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 64374-65064 bp Feature: gene Location: 65550-66326 bp Feature: domain Description: XerC Location: 65601-66309 bp Feature: domain Description: XerC Location: 65601 -66309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZBS01000066.1 Prevotella copri strain iAK269 NODE_28_length_49484_cov_91.1951_ID_55, whole genome shotgun sequence (49484 bp)
Overview 1 RT 1: 24841-29368 bp Neighborhood of RT #1 [24841, 29388] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24841-25842 bp Feature: domain Description: PRK09375 Location: 24901-25837 bp Feature: domain Description: PRK09375 Location: 2 4901-2 5837 bp Feature: gene Location: 26154-26312 bp Feature: gene Location: 26693-27802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27035-27653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7035-2 7653 bp Feature: gene Location: 27901-28095 bp Feature: gene Location: 28303-29388 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 28318-29368 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 8318-2 9368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZBS01000099.1 Prevotella copri strain iAK269 NODE_36_length_30582_cov_130.152_ID_71, whole genome shotgun sequence (30582 bp)
Overview 1 RT 1: 11453-16166 bp Neighborhood of RT #1 [11453, 16186] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11453-12247 bp Feature: domain Description: FldA Location: 11462-11738 bp Feature: domain Description: FldA Location: 11462-1173 8 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: gene Location: 12749-12913 bp Feature: gene Location: 12910-13989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13114-13771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 114-13 771 bp Feature: gene Location: 14074-15054 bp Feature: domain Description: LysR Location: 14173-15031 bp Feature: domain Description: LysR Location: 14173 -1503 1 bp Feature: gene Location: 15140-16186 bp Feature: domain Description: YeiH Location: 15158-16166 bp Feature: domain Description: YeiH Location: 15158-16166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)

Seq: VZBS01000031.1 Prevotella copri strain iAK269 NODE_3_length_187445_cov_69.8688_ID_5, whole genome shotgun sequence (187445 bp)
Overview 1 RT 1: 118467-125571 bp Neighborhood of RT #1 [118467, 126062] COG1373 RVT-GII GIIM GH43_Xsa43E-like CBM6_xylanase-like Glyco_hydro_127 DUF4986 Feature: gene Location: 118467-119636 bp Feature: domain Description: COG1373 Location: 118563-119625 bp Feature: domain Description: COG1373 Location: 118563-119625 bp Feature: gene Location: 119943-120098 bp Feature: gene Location: 120511-121914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120853-121471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120853-1214 71 bp Feature: domain Description: GIIM Note: maturase Location: 121525-121735 bp Feature: domain Description: GIIM Note: maturase Location: 121525-121735 bp Feature: gene Location: 122231-123577 bp Feature: domain Description: GH43_Xsa43E-like Location: 122330-123122 bp Feature: domain Description: GH4 3_Xsa4 3E-like Location: 122330-123122 bp Feature: domain Description: CBM6_xylanase-like Location: 123185-123569 bp Feature: domain Description: CBM6_xylanase-like Location: 123185-123569 bp Feature: gene Location: 123678-126062 bp Feature: domain Description: Glyco_hydro_127 Location: 123777-125310 bp Feature: domain Description: Glyco_hydro_127 Location: 123777-125310 bp Feature: domain Description: DUF4986 Location: 125325-125571 bp Feature: domain Description: DUF4 986 Location: 125325-125571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)

Seq: VZBS01000040.1 Prevotella copri strain iAK269 NODE_83_length_1831_cov_127.752_ID_165, whole genome shotgun sequence (1831 bp)
Overview 1 RT 1: 104-1547 bp Neighborhood of RT #1 [104, 1726] RVT-GII GIIM Feature: gene Location: 104-274 bp Feature: gene Location: 320-1726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1280 bp Feature: domain Description: GIIM Note: maturase Location: 1334-1547 bp Feature: domain Description: GIIM Note: maturase Location: 1334-15 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)