myRT

myRT report for GCA_009494565.1_ASM949456v1

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Seq: VZBT01000085.1 Prevotella copri strain iAK279 NODE_19_length_62486_cov_40.3172_ID_37, whole genome shotgun sequence (62486 bp)
Overview 1 RT 1: 14083-18113 bp Neighborhood of RT #1 [14083, 18113] DUF4062 SLATT_5 RVT-UG17 Feature: gene Location: 14083-15054 bp Feature: domain Description: DUF4062 Location: 14098-14356 bp Feature: domain Description: DUF4062 Location: 1 4098-1 4356 bp Feature: gene Location: 15098-15694 bp Feature: domain Description: SLATT_5 Location: 15104-15653 bp Feature: domain Description: SLATT_5 Location: 1 51 04-1 5653 bp Feature: gene Location: 15832-17214 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16051-16666 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 6051 -1 6666 bp Feature: gene Location: 17377-17553 bp Feature: gene Location: 17910-18113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), SLATT_5 (pfam18160), RVT-UG17

Seq: VZBT01000048.1 Prevotella copri strain iAK279 NODE_40_length_27168_cov_54.4739_ID_79, whole genome shotgun sequence (27168 bp)
Overview 1 RT 1: 17334-22523 bp Neighborhood of RT #1 [17334, 22582] PRK09375 RVT-GII GIIM GT9_LPS_heptosyltransferase DUF4254 Feature: gene Location: 17334-18335 bp Feature: domain Description: PRK09375 Location: 17394-18330 bp Feature: domain Description: PRK09375 Location: 17394-18330 bp Feature: gene Location: 18647-18805 bp Feature: gene Location: 19186-20592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19528-20146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1952 8-2 0146 bp Feature: domain Description: GIIM Note: maturase Location: 20203-20404 bp Feature: domain Description: GIIM Note: maturase Location: 2 02 03-2 0404 bp Feature: gene Location: 20799-21884 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 20814-21864 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2 0814-2 1864 bp Feature: gene Location: 21980-22582 bp Feature: domain Description: DUF4254 Location: 22097-22523 bp Feature: domain Description: DUF42 54 Location: 2 2 097-2 2 52 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GIIM (pfam08388), GT9_LPS_heptosyltransferase (cd03789), DUF4254 (pfam14063)

Seq: VZBT01000065.1 Prevotella copri strain iAK279 NODE_8_length_125508_cov_43.4319_ID_15, whole genome shotgun sequence (125508 bp)
Overview 1 RT 1: 54681-60116 bp Neighborhood of RT #1 [54681, 60316] RVT-GII GIIM NptA thrS UMPK_like Feature: gene Location: 54681-54836 bp Feature: gene Location: 55025-55195 bp Feature: gene Location: 55241-56647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55586-56201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55586-56201 bp Feature: domain Description: GIIM Note: maturase Location: 56255-56468 bp Feature: domain Description: GIIM Note: maturase Location: 56255-56468 bp Feature: gene Location: 56773-58482 bp Feature: domain Description: NptA Location: 56788-58459 bp Feature: domain Description: NptA Location: 56788-58459 bp Feature: gene Location: 58655-60316 bp Feature: domain Description: thrS Location: 58670-59261 bp Feature: domain Description: thrS Location: 58670-59261 bp Feature: domain Description: UMPK_like Location: 59525-60116 bp Feature: domain Description: UMPK_like Location: 59525-60116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NptA (COG1283), thrS (TIGR00418), UMPK_like (cd02028)