myRT

myRT report for GCA_009494715.1_ASM949471v1

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Seq: VZBM01000108.1 Prevotella copri strain iAK2617 NODE_23_length_62859_cov_78.9308_ID_45, whole genome shotgun sequence (62859 bp)
Overview 1 RT 1: 14083-18113 bp Neighborhood of RT #1 [14083, 18113] DUF4062 SLATT_5 RVT-UG17 Feature: gene Location: 14083-15054 bp Feature: domain Description: DUF4062 Location: 14098-14356 bp Feature: domain Description: DUF4062 Location: 1 4098-1 4356 bp Feature: gene Location: 15098-15694 bp Feature: domain Description: SLATT_5 Location: 15104-15653 bp Feature: domain Description: SLATT_5 Location: 1 51 04-1 5653 bp Feature: gene Location: 15832-17214 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 16051-16666 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 6051 -1 6666 bp Feature: gene Location: 17377-17553 bp Feature: gene Location: 17910-18113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), SLATT_5 (pfam18160), RVT-UG17

Seq: VZBM01000065.1 Prevotella copri strain iAK2617 NODE_31_length_42776_cov_114.321_ID_61, whole genome shotgun sequence (42776 bp)
Overview 1 RT 1: 32943-38132 bp Neighborhood of RT #1 [32943, 38191] PRK09375 RVT-GII GIIM GT9_LPS_heptosyltransferase DUF4254 Feature: gene Location: 32943-33944 bp Feature: domain Description: PRK09375 Location: 33003-33939 bp Feature: domain Description: PRK09375 Location: 33003-33939 bp Feature: gene Location: 34256-34414 bp Feature: gene Location: 34795-36201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35137-35755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35137-35755 bp Feature: domain Description: GIIM Note: maturase Location: 35812-36013 bp Feature: domain Description: GIIM Note: maturase Location: 35812 -36013 bp Feature: gene Location: 36408-37493 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 36423-37473 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3642 3-37473 bp Feature: gene Location: 37589-38191 bp Feature: domain Description: DUF4254 Location: 37706-38132 bp Feature: domain Description: DUF42 54 Location: 37706-38132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GIIM (pfam08388), GT9_LPS_heptosyltransferase (cd03789), DUF4254 (pfam14063)

Seq: VZBM01000036.1 Prevotella copri strain iAK2617 NODE_3_length_180495_cov_104.797_ID_5, whole genome shotgun sequence (180495 bp)
Overview 1 RT 1: 117271-122890 bp Neighborhood of RT #1 [117271, 122890] thrS UMPK_like NptA RVT-GII GIIM Feature: gene Location: 117271-118932 bp Feature: domain Description: thrS Location: 117286-117877 bp Feature: domain Description: thrS Location: 117286-117877 bp Feature: domain Description: UMPK_like Location: 118141-118732 bp Feature: domain Description: UMPK_like Location: 118141-11873 2 bp Feature: gene Location: 119105-120814 bp Feature: domain Description: NptA Location: 119120-120791 bp Feature: domain Description: NptA Location: 119120-120791 bp Feature: gene Location: 120940-122346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121285-121900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121285-121900 bp Feature: domain Description: GIIM Note: maturase Location: 121954-122167 bp Feature: domain Description: GIIM Note: maturase Location: 121954-122167 bp Feature: gene Location: 122392-122562 bp Feature: gene Location: 122753-122890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thrS (TIGR00418), UMPK_like (cd02028), NptA (COG1283), RVT-GII, GIIM (pfam08388)