myRT

myRT report for GCA_009494745.1_ASM949474v1

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Seq: VZBI01000022.1 Prevotella copri strain iAK127 NODE_28_length_49484_cov_28.5339_ID_55, whole genome shotgun sequence (49484 bp)
Overview 1 RT 1: 20097-25866 bp Neighborhood of RT #1 [20097, 25937] GT9_LPS_heptosyltransferase RVT-GII PRK09375 WcaA Feature: gene Location: 20097-21182 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 20112-21162 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 201 1 2-21 1 62 bp Feature: gene Location: 21390-21662 bp Feature: gene Location: 21683-22792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22025-22643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22025-22643 bp Feature: gene Location: 23643-24644 bp Feature: domain Description: PRK09375 Location: 23703-24639 bp Feature: domain Description: PRK09375 Location: 23703-24639 bp Feature: gene Location: 24966-25937 bp Feature: domain Description: WcaA Location: 24999-25866 bp Feature: domain Description: WcaA Location: 24999-25866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), RVT-GII, PRK09375 (quinolinate synthase NadA), WcaA (TIGR04017)

Seq: VZBI01000049.1 Prevotella copri strain iAK127 NODE_34_length_32135_cov_16.6392_ID_67, whole genome shotgun sequence (32135 bp)
Overview 1 RT 1: 29292-32075 bp Neighborhood of RT #1 [29292, 32092] Avd_like RVT-DGRs XerC Feature: gene Location: 29292-29687 bp Feature: domain Description: Avd_like Location: 29328-29646 bp Feature: domain Description: Avd_like Location: 2 932 8-2 9646 bp Feature: gene Location: 29760-29927 bp Feature: gene Location: 29954-31273 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30140-30830 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30140-30830 bp Feature: gene Location: 31316-32092 bp Feature: domain Description: XerC Location: 31367-32075 bp Feature: domain Description: XerC Location: 31367-32 075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZBI01000024.1 Prevotella copri strain iAK127 NODE_69_length_7508_cov_38.8945_ID_137, whole genome shotgun sequence (7508 bp)
Overview 1 RT 1: 64-3042 bp Neighborhood of RT #1 [64, 3042] RVT-GII FldA NapF Feature: gene Location: 64-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-925 bp Feature: gene Location: 1806-2600 bp Feature: domain Description: FldA Location: 1815-2091 bp Feature: domain Description: FldA Location: 1815-2091 bp Feature: domain Description: NapF Location: 2319-2541 bp Feature: domain Description: NapF Location: 23 19-2541 bp Feature: gene Location: 2605-3042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII

Seq: VZBI01000002.1 Prevotella copri strain iAK127 NODE_8_length_98375_cov_21.8471_ID_15, whole genome shotgun sequence (98375 bp)
Overview 1 RT 1: 61374-68958 bp Neighborhood of RT #1 [61374, 68969] Glyco_hydro_127 DUF4986 GH43_Xsa43E-like CBM6_xylanase-like RVT-GII GIIM COG1373 Feature: gene Location: 61374-63758 bp Feature: domain Description: Glyco_hydro_127 Location: 61473-63006 bp Feature: domain Description: Glyco_hydro_127 Location: 614 73-63006 bp Feature: domain Description: DUF4986 Location: 63021-63267 bp Feature: domain Description: DUF4 986 Location: 63021-63267 bp Feature: gene Location: 63859-65205 bp Feature: domain Description: GH43_Xsa43E-like Location: 63958-64750 bp Feature: domain Description: GH4 3_Xsa4 3E-like Location: 63958-64 750 bp Feature: domain Description: CBM6_xylanase-like Location: 64813-65197 bp Feature: domain Description: CBM6_xylanase-like Location: 64 813-65197 bp Feature: gene Location: 65522-66925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65864-66482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65864 -664 82 bp Feature: domain Description: GIIM Note: maturase Location: 66536-66746 bp Feature: domain Description: GIIM Note: maturase Location: 66536-6674 6 bp Feature: gene Location: 67338-67493 bp Feature: gene Location: 67800-68969 bp Feature: domain Description: COG1373 Location: 67896-68958 bp Feature: domain Description: COG1373 Location: 67896-68958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), RVT-GII, GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: VZBI01000038.1 Prevotella copri strain iAK127 NODE_97_length_1732_cov_41.1163_ID_193, whole genome shotgun sequence (1732 bp)
Overview 1 RT 1: 5-1448 bp Neighborhood of RT #1 [5, 1627] RVT-GII GIIM Feature: gene Location: 5-175 bp Feature: gene Location: 221-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 63-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1235-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1235 -1448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)