myRT

myRT report for GCA_009494765.1_ASM949476v1

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Seq: VZBH01000083.1 Prevotella copri strain iAQ11815 NODE_23_length_57762_cov_20.5733_ID_45, whole genome shotgun sequence (57762 bp)
Overview 1 RT 1: 9329-14089 bp Neighborhood of RT #1 [9329, 14089] RVT-DGRs Feature: gene Location: 9329-10447 bp Feature: gene Location: 10467-10892 bp Feature: gene Location: 10913-12394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11129-11840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 1 29-1 1 840 bp Feature: gene Location: 12614-12748 bp Feature: gene Location: 12821-14089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VZBH01000121.1 Prevotella copri strain iAQ11815 NODE_24_length_57604_cov_16.0499_ID_47, whole genome shotgun sequence (57602 bp)
Overview 1 RT 1: 46082-49340 bp Neighborhood of RT #1 [46082, 49396] DUF5106 Thioredoxin_8 RVT-DGRs Avd_like Feature: gene Location: 46082-46252 bp Feature: gene Location: 46410-47264 bp Feature: domain Description: DUF5106 Location: 46506-46842 bp Feature: domain Description: DUF5106 Location: 46506-46842 bp Feature: domain Description: Thioredoxin_8 Location: 46926-47202 bp Feature: domain Description: Thioredoxin_8 Location: 4692 6-472 02 bp Feature: gene Location: 47279-48538 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47489-48209 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47489-482 09 bp Feature: gene Location: 48537-48767 bp Feature: gene Location: 49004-49396 bp Feature: domain Description: Avd_like Location: 49031-49340 bp Feature: domain Description: Avd_like Location: 49031-49340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5106 (pfam17127), Thioredoxin_8 (pfam13905), RVT-DGRs, Avd_like (cd16376)

Seq: VZBH01000085.1 Prevotella copri strain iAQ11815 NODE_33_length_45741_cov_17.3842_ID_65, whole genome shotgun sequence (45741 bp)
Overview 1 RT 1: 3-2816 bp Neighborhood of RT #1 [3, 2878] RVT-GII GIIM DUF1016_N YhcG_C Lipocalin_4 Feature: gene Location: 3-830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-3 84 bp Feature: domain Description: GIIM Note: maturase Location: 438-648 bp Feature: domain Description: GIIM Note: maturase Location: 43 8-648 bp Feature: gene Location: 968-2125 bp Feature: domain Description: DUF1016_N Location: 1025-1526 bp Feature: domain Description: DUF1016_N Location: 1025-1526 bp Feature: domain Description: YhcG_C Location: 1607-2069 bp Feature: domain Description: YhcG_C Location: 1607-2069 bp Feature: gene Location: 2408-2878 bp Feature: domain Description: Lipocalin_4 Location: 2531-2816 bp Feature: domain Description: Lipocalin_4 Location: 253 1-2816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipocalin_4 (pfam13648), RVT-GII, GIIM (pfam08388), DUF1016_N (pfam17761), YhcG_C

Seq: VZBH01000056.1 Prevotella copri strain iAQ11815 NODE_49_length_27043_cov_16.4462_ID_97, whole genome shotgun sequence (27043 bp)
Overview 1 RT 1: 117-3027 bp Neighborhood of RT #1 [117, 3059] RVT-GII GIIM COG3617 ANT Feature: gene Location: 117-1523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-1077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 59-1077 bp Feature: domain Description: GIIM Note: maturase Location: 1131-1344 bp Feature: domain Description: GIIM Note: maturase Location: 1131-134 4 bp Feature: gene Location: 1569-1739 bp Feature: gene Location: 2055-3059 bp Feature: domain Description: COG3617 Location: 2118-2604 bp Feature: domain Description: COG3617 Location: 2118-2604 bp Feature: domain Description: ANT Location: 2688-3027 bp Feature: domain Description: ANT Location: 2688-3027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3617 (Prophage antirepressor ), ANT (pfam03374)

Seq: VZBH01000090.1 Prevotella copri strain iAQ11815 NODE_50_length_25888_cov_14.7275_ID_99, whole genome shotgun sequence (25888 bp)
Overview 1 RT 1: 486-10071 bp Neighborhood of RT #1 [486, 10169] AAA_14 PRK02813 RVT_N RVT-GII GIIM COG3292 COG3292 COG3292 Y_Y_Y BaeS PRK11107 YesN Cellulase Feature: gene Location: 486-896 bp Feature: domain Description: AAA_14 Location: 543-867 bp Feature: domain Description: AAA_14 Location: 5 43-867 bp Feature: gene Location: 1045-2331 bp Feature: domain Description: PRK02813 Location: 1051-2326 bp Feature: domain Description: PRK02813 Location: 105 1-2326 bp Feature: gene Location: 2995-4491 bp Feature: RT Description: RVT_N Location: 3061-3304 bp Feature: RT Description: RVT_N Location: 3061-3304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349-3991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349-3991 bp Feature: domain Description: GIIM Note: maturase Location: 4048-4279 bp Feature: domain Description: GIIM Note: maturase Location: 4048-4279 bp Feature: gene Location: 4637-8770 bp Feature: domain Description: COG3292 Location: 4658-5654 bp Feature: domain Description: COG3292 Location: 465 8-5 65 4 bp Feature: domain Description: COG3292 Location: 5711-6038 bp Feature: domain Description: COG3292 Location: 5 711-6038 bp Feature: domain Description: COG3292 Location: 6281-6584 bp Feature: domain Description: COG3292 Location: 6281-65 84 bp Feature: domain Description: Y_Y_Y Location: 6770-6959 bp Feature: domain Description: Y_Y_Y Location: 6770-695 9 bp Feature: domain Description: BaeS Location: 7052-7748 bp Feature: domain Description: BaeS Location: 705 2-7748 bp Feature: domain Description: PRK11107 Location: 7844-8249 bp Feature: domain Description: PRK11107 Location: 7844-8249 bp Feature: domain Description: YesN Location: 8417-8768 bp Feature: domain Description: YesN Location: 8417-8768 bp Feature: gene Location: 8949-10169 bp Feature: domain Description: Cellulase Location: 9186-10071 bp Feature: domain Description: Cellulase Location: 9186-10071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02813 (putative aminopeptidase 2; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), BaeS (COG0642), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), YesN (COG4753), AAA_14 (pfam13173)

Seq: VZBH01000042.1 Prevotella copri strain iAQ11815 NODE_63_length_14757_cov_15.8302_ID_125, whole genome shotgun sequence (14757 bp)
Overview 1 RT 1: 3-4502 bp Neighborhood of RT #1 [3, 4516] RVT-GII GIIM KefB Na_H_Antiporter_C SDF Feature: gene Location: 3-830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-384 bp Feature: domain Description: GIIM Note: maturase Location: 438-645 bp Feature: domain Description: GIIM Note: maturase Location: 438-6 45 bp Feature: gene Location: 938-3067 bp Feature: domain Description: KefB Location: 980-2123 bp Feature: domain Description: KefB Location: 980-2123 bp Feature: domain Description: Na_H_Antiporter_C Location: 2186-2531 bp Feature: domain Description: Na_H_Antiporter_C Location: 2186 -2531 bp Feature: gene Location: 3233-4516 bp Feature: domain Description: SDF Location: 3341-4502 bp Feature: domain Description: SDF Location: 3341-4502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SDF (pfam00375), RVT-GII, GIIM (pfam08388), KefB (COG0475), Na_H_Antiporter_C (cd01988)