myRT

myRT report for GCA_009494885.1_ASM949488v1

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Seq: VZBB01000108.1 Prevotella copri strain iAK2612 NODE_102_length_1831_cov_203.312_ID_203, whole genome shotgun sequence (1831 bp)
Overview 1 RT 1: 104-1547 bp Neighborhood of RT #1 [104, 1726] RVT-GII GIIM Feature: gene Location: 104-274 bp Feature: gene Location: 320-1726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662-1 280 bp Feature: domain Description: GIIM Note: maturase Location: 1334-1547 bp Feature: domain Description: GIIM Note: maturase Location: 1 334-1 547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VZBB01000073.1 Prevotella copri strain iAK2612 NODE_13_length_80390_cov_100.841_ID_25, whole genome shotgun sequence (80390 bp)
Overview 1 RT 1: 11487-18591 bp Neighborhood of RT #1 [11487, 19082] COG1373 RVT-GII GIIM GH43_Xsa43E-like CBM6_xylanase-like Glyco_hydro_127 DUF4986 Feature: gene Location: 11487-12656 bp Feature: domain Description: COG1373 Location: 11583-12645 bp Feature: domain Description: COG1373 Location: 11583-12 645 bp Feature: gene Location: 12963-13118 bp Feature: gene Location: 13531-14934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13873-14491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13873-14491 bp Feature: domain Description: GIIM Note: maturase Location: 14545-14755 bp Feature: domain Description: GIIM Note: maturase Location: 14545-14755 bp Feature: gene Location: 15266-16597 bp Feature: domain Description: GH43_Xsa43E-like Location: 15350-16142 bp Feature: domain Description: GH43_Xsa43E-like Location: 15350-16142 bp Feature: domain Description: CBM6_xylanase-like Location: 16205-16589 bp Feature: domain Description: CBM6_xylanase-like Location: 162 05-16589 bp Feature: gene Location: 16698-19082 bp Feature: domain Description: Glyco_hydro_127 Location: 16797-18330 bp Feature: domain Description: Glyco_hydro_12 7 Location: 16797-18330 bp Feature: domain Description: DUF4986 Location: 18345-18591 bp Feature: domain Description: DUF4986 Location: 18345-18591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), GH43_Xsa43E-like (cd18618), CBM6_xylanase-like (cd04084), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)

Seq: VZBB01000040.1 Prevotella copri strain iAK2612 NODE_19_length_62840_cov_83.7332_ID_37, whole genome shotgun sequence (62840 bp)
Overview 1 RT 1: 59856-62639 bp Neighborhood of RT #1 [59856, 62656] Avd_like RVT-DGRs XerC Feature: gene Location: 59856-60251 bp Feature: domain Description: Avd_like Location: 59892-60210 bp Feature: domain Description: Avd_like Location: 59892-60210 bp Feature: gene Location: 60324-60491 bp Feature: gene Location: 60518-61837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60704-61394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60704-613 94 bp Feature: gene Location: 61880-62656 bp Feature: domain Description: XerC Location: 61931-62639 bp Feature: domain Description: XerC Location: 6193 1-6263 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)

Seq: VZBB01000089.1 Prevotella copri strain iAK2612 NODE_29_length_46178_cov_141.417_ID_57, whole genome shotgun sequence (46178 bp)
Overview 1 RT 1: 24369-28896 bp Neighborhood of RT #1 [24369, 28916] PRK09375 RVT-GII GT9_LPS_heptosyltransferase Feature: gene Location: 24369-25370 bp Feature: domain Description: PRK09375 Location: 24429-25365 bp Feature: domain Description: PRK09375 Location: 24 4 29-25365 bp Feature: gene Location: 25682-25840 bp Feature: gene Location: 26221-27330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26563-27181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26563-27181 bp Feature: gene Location: 27429-27623 bp Feature: gene Location: 27831-28916 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 27846-28896 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2784 6-28896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09375 (quinolinate synthase NadA), RVT-GII, GT9_LPS_heptosyltransferase (cd03789)

Seq: VZBB01000025.1 Prevotella copri strain iAK2612 NODE_37_length_30150_cov_157.062_ID_73, whole genome shotgun sequence (30150 bp)
Overview 1 RT 1: 11453-16163 bp Neighborhood of RT #1 [11453, 16183] FldA NapF RVT-GII LysR YeiH Feature: gene Location: 11453-12247 bp Feature: domain Description: FldA Location: 11462-11738 bp Feature: domain Description: FldA Location: 11462-11738 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: domain Description: NapF Location: 11966-12188 bp Feature: gene Location: 12749-12913 bp Feature: gene Location: 12910-13989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13114-13771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13114-13771 bp Feature: gene Location: 14074-15051 bp Feature: domain Description: LysR Location: 14173-15028 bp Feature: domain Description: LysR Location: 14173-15 028 bp Feature: gene Location: 15137-16183 bp Feature: domain Description: YeiH Location: 15155-16163 bp Feature: domain Description: YeiH Location: 15 15 5 -16163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FldA (COG0716), NapF (COG1145), RVT-GII, LysR (COG0583), YeiH (COG2855)